Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1445 ATGAGTCTGAGTGTTGCAGCAGCAGCAACAACAACCACAACTCAAGTAGCCAAAACAAGTGGTGGAGTTGTTTCTTCTTCATCAAAGAAGGGAAGGGGTGGTGGTTCAGTGCAAGCATCTAGGTGTCAGGTTGAGGGCTGCAAAGTAGATCTGAGTGGAGCTAAGGCTTACTATTCTAGGCACAAAGTTTGTGCCATGCACTCCAAGTCCCCCACTGTCACTGTTGCTGGTTTGAACCAAAGGTTTCATCTGCTTTCTGAATTTGATCAAGGAAAACGAAGCTGCCGCAGGCGACTTGCTGGCCATAATGAGCGCCGTCGAAAGCCCCCGCCAAGCTCCATATTAACCTCTCGCTATGGCAGACTCTCTGCGCCTATTTTCGAGCTTACATTGAGAAACACCACACTGCCGACTCTAAGATCAGCTGAGCCAGTTCCCGGGAGCCATGCTGCAACACTCACCTGGCAAGGAGGTTCAGACACAACTCCATCTGAATTTTTCCTGCAAGGGAGTGGTGGAACAAGCTTCACTGGAGTCACTGACTCAAACTGTGCTCTCTCTCTTCTGTCAAGTCAAACCTGGGGTTCAAGAAACACGGCCCCGGCCCCAGCAACAAGTGTTGTTGATCTGAACAACAACTTGTTGAACTTCAACGGGACATCATCCATGTCACAATTCACTGTGGTGGCGGCGTCTTCTTCTCAAGTTGCAGCCATCCATCAGCTTCCGTGGTACCTGAAGGGCATCGATTCGGGTAACTGTTCAGCCGAGGGCGTCCCCGATCTTGGCCTCGGTCAAATTTCGCCGCCTCTTCATGGCCATCTTCATGGTGAGCTTGATGTGTCACAGCTGTCCAGAGCATGTGAGTCTTCTCACTGGTCTCTTTGA 888 0.5079 MSLSVAAAATTTTTQVAKTSGGVVSSSSKKGRGGGSVQASRCQVEGCKVDLSGAKAYYSRHKVCAMHSKSPTVTVAGLNQRFHLLSEFDQGKRSCRRRLAGHNERRRKPPPSSILTSRYGRLSAPIFELTLRNTTLPTLRSAEPVPGSHAATLTWQGGSDTTPSEFFLQGSGGTSFTGVTDSNCALSLLSSQTWGSRNTAPAPATSVVDLNNNLLNFNGTSSMSQFTVVAASSSQVAAIHQLPWYLKGIDSGNCSAEGVPDLGLGQISPPLHGHLHGELDVSQLSRACESSHWSL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1445 295 Pfam SBP domain 42 108 IPR004333 GO:0003677
Aed8g1445 295 MobiDBLite consensus disorder prediction 9 38 - -
Aed8g1445 295 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 25 286 - -
Aed8g1445 295 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 286 IPR044817 GO:0003677
Aed8g1445 295 MobiDBLite consensus disorder prediction 9 34 - -
Aed8g1445 295 SUPERFAMILY SBT domain 41 114 IPR036893 GO:0003677|GO:0005634
Aed8g1445 295 ProSiteProfiles Zinc finger SBP-type profile. 39 109 IPR004333 GO:0003677
Aed8g1445 295 Gene3D - 33 96 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1445 Aed-Chr8 19193582 19198130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1445 41 270 SBP-box Gene Family AT2G42200 39.777 1.15e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed8g1445 SBP 8.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1445 - - gmx:100789301 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1445 8 19193582 19198130 Aed8g1445 8 19193582 19198130 ECH
Aed4g0390 4 2785344 2789358 Aed8g1445 8 19193582 19198130 PCT