Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1422 ATGGATTCCAACCATATCAATCATCACCAGAGTTACCAACAACACTTACAACAGAACCAATCCTCTTCTGGGTTGCTTCGTTTTCGTTCTTCTCCAAGCTCTATCATTTCAAATCGCACACCTTCTTTCGCCAGCTACGGTGCTGAAGACATTGGTTATAGTAGCTTCCTAGACTTGTTGGAAGGAAAAAACAACAACAACAACAACGACAGCAACAGCAACAGTGACAAGGCTTGTTCTGAGGATTTGAGTTCGATGAATTCGCATAAGGGTGTGTATGGTGTGGGGTTGCCACCTCACTATCCGAGGCACGGTTCTTCTTCTTCTTCTGCTGCTGCTGCTACTTTGAGTTCTGCCATGGAAGAGTCTTATGGGTTGGTGAGTTCAATGGGAATGGATCATGAAACGCTCCATAAGGGGTTTGAGTCAAGTCTTCTCAGGCAGAATAGCTCCCCTGTTGGCCTTTTCACCAACAACAACATTTCCTTTCAAAATGGGTTTGGCACCATGAAAGGTGTTGGAAAGTATGGTGGGGTGAATGGCAGTAATGGTGAACTTAGACCAGGCATTAACAACGGATTGAACTTGAGTAATCATTTTAGCTTCTCACCAAGAAATGCTTCTTCCCTGGGAATGTTGTCGCAGATCTCCGAATTCGAGAGTGAAGACATTGAGGATAGTAGTCCTGATGATGATACAATGCATGGAGGTAATGATACTCAACATTTTGGCCCTGGATTCCCCTATGGTTCTTGGAATATTACTCCACAACTCTCAGAAAATCTCAGTGGCTTGAAAAGAAATGGAGAGCTAGGAAACCAAGTTAATATGTTATCACATCACTTGAGTTTCCAAAAAACTCCAGCAGAGATGACTACTATGGAGAAGTTGCATCAGTTACCTTTGCCTGTGAGAAGAACTCGGATCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTGCCAAACATGGATAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATCAAAGACCTTCAGAAACATTCCAAGGCTCTAAGTGAAAAAATGGAAAACTGCAAGTGTTCAAGCGTGCAAAAGGAAGATACAAACCAAATTGATTGA 1116 0.4256 MDSNHINHHQSYQQHLQQNQSSSGLLRFRSSPSSIISNRTPSFASYGAEDIGYSSFLDLLEGKNNNNNNDSNSNSDKACSEDLSSMNSHKGVYGVGLPPHYPRHGSSSSSAAAATLSSAMEESYGLVSSMGMDHETLHKGFESSLLRQNSSPVGLFTNNNISFQNGFGTMKGVGKYGGVNGSNGELRPGINNGLNLSNHFSFSPRNASSLGMLSQISEFESEDIEDSSPDDDTMHGGNDTQHFGPGFPYGSWNITPQLSENLSGLKRNGELGNQVNMLSHHLSFQKTPAEMTTMEKLHQLPLPVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKHSKALSEKMENCKCSSVQKEDTNQID 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1422 371 MobiDBLite consensus disorder prediction 220 249 - -
Aed8g1422 371 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 304 363 - -
Aed8g1422 371 SMART finulus 303 349 IPR011598 GO:0046983
Aed8g1422 371 MobiDBLite consensus disorder prediction 65 85 - -
Aed8g1422 371 MobiDBLite consensus disorder prediction 1 27 - -
Aed8g1422 371 Pfam Helix-loop-helix DNA-binding domain 305 344 IPR011598 GO:0046983
Aed8g1422 371 PANTHER TRANSCRIPTION FACTOR BHLH130 304 363 - -
Aed8g1422 371 PANTHER TRANSCRIPTION FACTOR BHLH130 16 300 - -
Aed8g1422 371 Gene3D - 304 368 IPR036638 GO:0046983
Aed8g1422 371 CDD bHLH_AtbHLH_like 298 351 IPR045239 -
Aed8g1422 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 343 IPR011598 GO:0046983
Aed8g1422 371 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 300 - -
Aed8g1422 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 305 358 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1422 Aed-Chr8 18821957 18825616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1422 19 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 38.743 2.13e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed8g1422 HLH 8.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1422 - - gmx:100819605 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1422 8 18821957 18825616 Aed8g1422 8 18821957 18825616 ECH
Aed8g1422 8 18821957 18825616 Aed1g1278 1 12068618 12072372 ECH
Aed4g0409 4 2903782 2907446 Aed8g1422 8 18821957 18825616 PCT