Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1405 ATGGATTCAAGAAACGTCCCAAACATGAACGGCATCACTAAGAAGGGCAAAGGTAGACAAAAGATTGAGATGAAGATGACCAAGAAGTGTAACCTTCAAGTGACGTTTTCGAAGCGTCATGCACGGATTTTCAAGAAAGTGAGTGAACTTGCAACCCTATGCAACGTGGACCTTGCTGTGGTTATGTTCTCTCCCAGTAACCGAGTTTGCTCCTTCGGCAACCCCAATGTGGATTCCATTATCAAACGCTATACAACATGGGGCCCACCTCCCCTCCTCACCTAA 285 0.4632 MDSRNVPNMNGITKKGKGRQKIEMKMTKKCNLQVTFSKRHARIFKKVSELATLCNVDLAVVMFSPSNRVCSFGNPNVDSIIKRYTTWGPPPLLT 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1405 94 ProSiteProfiles MADS-box domain profile. 17 76 IPR002100 GO:0003677|GO:0046983
Aed8g1405 94 SUPERFAMILY SRF-like 18 90 IPR036879 GO:0003677|GO:0046983
Aed8g1405 94 MobiDBLite consensus disorder prediction 1 20 - -
Aed8g1405 94 PANTHER MADS BOX PROTEIN 17 87 - -
Aed8g1405 94 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Aed8g1405 94 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Aed8g1405 94 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Aed8g1405 94 Gene3D - 29 87 IPR036879 GO:0003677|GO:0046983
Aed8g1405 94 SMART madsneu2 17 75 IPR002100 GO:0003677|GO:0046983
Aed8g1405 94 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 72 IPR002100 GO:0003677|GO:0046983
Aed8g1405 94 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 17 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1405 Aed-Chr8 18536401 18536685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1405 12 91 Type I MADS-box Gene Family AT5G60440 59.259 8.34e-27 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed8g1405 SRF-TF 3.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1405 - - gmx:102670100 134.42