Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1392 ATGGCAGACCCTTACTCCAGTTTCTTCTCACAAGGCAGAAGTAGTTTCTCCCATCACTACCCTTCTCCAAACCCTTCACAACACCACCACCACCCTTATGCTCACAACTTCCTTAACCAAACCGGTTCTAACCACAGAACCTTTTTCCACTTTCAAACCACATTTTGTTCTTCTTCACCTCCTTCCCCTCCTTTGAGAGAAGCCCTTCCTCTTCTAACCCTCAGCCCTAGAAATGAACAAGAACAACAAGAGGATTTTCATCAAGTTTCGGAGATTCATCAGGATCAGGACCATTACTTTTGCACCGCCATGGATGTCGAAGAGGACTCCAACAACAACAACAACAATAGAATAAGTACCCTTCTTCACCTTCACCACCCCAAAGAAGAGCAAGAGCAAGATCATGATGATGATGATGAAAATGTCACTGTTGCACTTCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATAGCTTCTGTGCTCTCTTCAGCAGCTTGTTCCACAGATGGTGGTGGTGGGGGTAATAGCAATAATAACAATACTAATAGTAATAATAACAATGGGAATTATGAGGATTCTTCTTCTACTACTTCAGGGTTCTTGTCCAACAGGCTCAACAAGGGACAGTACTGGATCCCTACACCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCTTGTCCTGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCCCTTAGGGGAACCCAACCAACAGGTATGCTAAGGCTTCCATGCTACTGCTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCTCTAAAGGACTTCAGAACCCTCCAAACACACTACAAGAGGAAGCATGGCATCAAGCCCTTCATGTGCAGGAAGTGTGGCAAGGCCTTTGCTGTCAGAGGGGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTTTGGTATTGCATCTGTGGCTCTGATTTCAAGCACAAGAGATCCCTTAAGGATCACATCAAAGCCTTTGGAACTGGACATGCAGCTTATAGGGTTGATGGCTTTGAAGAAGAGGAAGAACCTGCATCTGAAGTAGAACAAGATAATGATTAA 1155 0.4511 MADPYSSFFSQGRSSFSHHYPSPNPSQHHHHPYAHNFLNQTGSNHRTFFHFQTTFCSSSPPSPPLREALPLLTLSPRNEQEQQEDFHQVSEIHQDQDHYFCTAMDVEEDSNNNNNNRISTLLHLHHPKEEQEQDHDDDDENVTVALHIGLPSPSAAEIASVLSSAACSTDGGGGGNSNNNNTNSNNNNGNYEDSSSTTSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGTGHAAYRVDGFEEEEEPASEVEQDND 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1392 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 310 330 IPR013087 -
Aed8g1392 384 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 26 384 - -
Aed8g1392 384 SUPERFAMILY beta-beta-alpha zinc fingers 292 330 IPR036236 -
Aed8g1392 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Aed8g1392 384 MobiDBLite consensus disorder prediction 165 199 - -
Aed8g1392 384 SMART c2h2final6 310 330 IPR013087 -
Aed8g1392 384 SMART c2h2final6 226 248 IPR013087 -
Aed8g1392 384 Gene3D Classic Zinc Finger 273 367 - -
Aed8g1392 384 Gene3D Classic Zinc Finger 225 248 - -
Aed8g1392 384 MobiDBLite consensus disorder prediction 7 23 - -
Aed8g1392 384 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Aed8g1392 384 MobiDBLite consensus disorder prediction 1 39 - -
Aed8g1392 384 PANTHER ZINC FINGER PROTEIN WIP2 26 384 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1392 Aed-Chr8 18227551 18230215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1392 1 384 C2H2 Transcription Factor Family AT3G57670 59.305 1.17e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed8g1392 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1392 - - gmx:100783088 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1392 8 18227551 18230215 Aed8g1392 8 18227551 18230215 ECH
Aed8g1392 8 18227551 18230215 Aed1g1266 1 12014500 12017564 ECH
Aed4g0426 4 3036436 3040064 Aed8g1392 8 18227551 18230215 PCT