Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1382 ATGAAAGCATTTGGAGAGTTTAAAGCCAGTGCTATATTCAACTCTGTTTCCTATTTTGATAAGTGCTCTCAACCCAGAAGCCACATGATGAACAACTTGACCATTGAGACTGAGGATTCTTTTGCAGGCTTGCTTGAGCTTGCAGCTAATAATGATGTTGAAGGTTTCAAGCGAATGATTGAGAGGGATCCTTCCTGTGTAGATGAGGTAGGACTATGGTACAGTCATCAGAAGGGGTCTAGGAAGATGGTCAATGAGCTCAGAACGCCATTGATGGTTGCTGCTACTTATGGTAGCATTGATATTCTGGATCTGATTCTCTCACTCTCTGGTTGTGATATTAATAAACATTGCGGCCTTGACAAGAGCACTGCCCTTCATTGTGCTGCTTCGGGTGGGGCCGAAAATGCTGTTGATGTTGTTATATTGCTTCTAGCCGCAGGGGCTGATCCAAATTCTGTGGATGGCAACGGTCATCGTCCGGTTGATGTCATTGTTGTTCCTCCCAAGCATGAATCTGATAGAAACAGTCTTGAAGCACTTCTTCAAACTGATGACTCCATTGCCGTGTGTAATCTCAGGGTGATCACGGCCCCGTCAAATGCATATTCTCCACCTTTCTCAACTTCACCAGAGAATGGGTCTCCTTCTGCACAAGATTTCCAATTGAAGTCAAAGTTCAACGATGGCTTCATTTCTTCTGCATCAGAAAAGAAAGAATATCCTATTGATCCATCCCTTCCTGATATCAAGAATAGCATATATTCAACTGATGAATTCCGGATGTATTCTTTCAAAGTCCGACCTTGTTCTCGTGCTTATTCACATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCTCGGAGAAGGGACCCAAGAAAGTATCACTACAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCTTGCCGACGTGGAGATATGTGTGAATATGCTCATGGAGTTTTTGAGTGCTGGCTGCATCCAGCACAATATCGAACCCGTCTTTGCAAGGATGGGACAAGCTGCTCCAGAAGAGTTTGCTTTTTTGCTCACACTGCAGAGGAGCTTCGGCCATTATATGTTTCAACTGGTTCTGCTGTACCATCTCCTCGCTCAAGCACGTCTTCTGCTATGGATTTTGCTGCAGCCATGAACATGTTGCCTGGCTCTCCTTCCTCAATGTCTGTCATGTCTCCTTCACCGTTCACTCCGCCTATGTCGCCCTCTGCCAATGGCATGTCACACCCTTCTGTTCCCTGGCCCCAACCCAATATGCCAGCCTTGCATCTACCAGGGAGTAATATTCATTCCAGTCGTTTGAGATCTTCATTCAATGCTAGAGATATTCCCATGGATGACTTTGACTTGTTGTCTGACTATGATATTCAGCAACAGCAACAGCAACAACTCCTTAATGAGTTTTCTTGCCTCTCTAAACAGCCTATGAATTCTAATGCTATGAATATGAACCGCCCCGGCCGCATTAAAACCCTGACCCCTTCAAATCTTGATGATCTATTTTCTTCTGAGAGTTCATCTCCTCGGTTTGCTGATCCAGCATTGGCTTCGGCTGTTTTTTCTCCTACACATAAATCAGCTATCCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTGTCTCCTGTGAACACACACTTTTCTAAAAATGTCGAGAATCCATTAATACAAGGCAGCGCCTCTTTTGGGGTTCAGCAGTCAGGAAGGATGTCTCCTCGAAACGTGGAACCTATTTCACCAATGAGCTCTCGGATTTCTGTGCTAGCTCAACGTGAGAAGCAGCAACAATTCCAAAGCCTTAGCTCCAGGGAACTTGGCTCCAACTCTGCTACTGTTGCCACTGTTGCTGCTGCTGCCGGTTCCCCAGCCAATTCTTGGTCAAAATGGGGATCCTCCAATGGTACATTGGATTGGGCTGTCAATGCAGATGAATTTGGGAAGCTACGTAGATCATCTTCGTTCGAGCACGTGAATAACGGTGAGGAGCAGCCTGATTTCTCATGGGTCCAGTCACTTGTTAAAGAATCTCCAGCTGAAATTAAGGAGAATCCGCCAGCAAGGACTGCCTCAAGTGTTGCAGCAGCAGCTGGATCCTCCCGTGAGGTACCAAATATGAGCACACAAATGGACACCGTTGATCATGCTGTGTTAGGAGCATGGCTTGAACAAATGCAGCTCGATCATCTCGTGGCTCAGCAAAACTAA 2232 0.4583 MKAFGEFKASAIFNSVSYFDKCSQPRSHMMNNLTIETEDSFAGLLELAANNDVEGFKRMIERDPSCVDEVGLWYSHQKGSRKMVNELRTPLMVAATYGSIDILDLILSLSGCDINKHCGLDKSTALHCAASGGAENAVDVVILLLAAGADPNSVDGNGHRPVDVIVVPPKHESDRNSLEALLQTDDSIAVCNLRVITAPSNAYSPPFSTSPENGSPSAQDFQLKSKFNDGFISSASEKKEYPIDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMNMLPGSPSSMSVMSPSPFTPPMSPSANGMSHPSVPWPQPNMPALHLPGSNIHSSRLRSSFNARDIPMDDFDLLSDYDIQQQQQQQLLNEFSCLSKQPMNSNAMNMNRPGRIKTLTPSNLDDLFSSESSSPRFADPALASAVFSPTHKSAILNQFQQQQSLLSPVNTHFSKNVENPLIQGSASFGVQQSGRMSPRNVEPISPMSSRISVLAQREKQQQFQSLSSRELGSNSATVATVAAAAGSPANSWSKWGSSNGTLDWAVNADEFGKLRRSSSFEHVNNGEEQPDFSWVQSLVKESPAEIKENPPARTASSVAAAAGSSREVPNMSTQMDTVDHAVLGAWLEQMQLDHLVAQQN 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1382 743 Gene3D - 299 362 - -
Aed8g1382 743 Pfam Ankyrin repeats (3 copies) 78 155 IPR002110 GO:0005515
Aed8g1382 743 SUPERFAMILY Ankyrin repeat 38 166 IPR036770 -
Aed8g1382 743 MobiDBLite consensus disorder prediction 687 713 - -
Aed8g1382 743 ProSiteProfiles Ankyrin repeat region circular profile. 121 155 - -
Aed8g1382 743 Gene3D - 38 186 IPR036770 -
Aed8g1382 743 ProSiteProfiles Zinc finger C3H1-type profile. 304 326 IPR000571 GO:0046872
Aed8g1382 743 ProSiteProfiles Ankyrin repeat profile. 121 156 IPR002110 GO:0005515
Aed8g1382 743 SMART c3hfinal6 334 357 IPR000571 GO:0046872
Aed8g1382 743 SMART c3hfinal6 299 325 IPR000571 GO:0046872
Aed8g1382 743 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 30 740 - -
Aed8g1382 743 PANTHER UNKEMPT FAMILY MEMBER 30 740 IPR045234 -
Aed8g1382 743 SMART ANK_2a 121 153 IPR002110 GO:0005515
Aed8g1382 743 SMART ANK_2a 86 116 IPR002110 GO:0005515
Aed8g1382 743 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 324 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1382 Aed-Chr8 18061609 18063840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1382 32 736 C2H2 Transcription Factor Family AT5G12850 51.816 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed8g1382 Ank_2 1.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1382 - - gmx:100813554 1222.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1382 8 18061609 18063840 Aed8g1382 8 18061609 18063840 ECH