Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1373 ATGGGAACTCCGGAATTTCCAGATCTGGGAAAGCACTGTGCTGTCTCCGATTGCAAGCTGATCGATTTCTTGCCTTTCACTTGCGATCGCTGCGACCAGGTTTATTGTTTGACGCACAGAAGTTACATTAAACATCATTGTACAAAAGCAAACAAGCAAGATGTCACAGTAGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAACATAACATGGGAGAATCATGTCAACACCGAGTGCGACCCATCGAATTATGAGAAAGTCACAAAGAAAAAAAAATGCCCTGTCCCTGGATGCAGAGAGATATTAGGATTCTCGAACACAATTAAGTGTAGAGACTGCACGGTAGAGCATTGTTTAAAGCATCGCTTTGGACCCGATCATAAATGTCCCGGTCCCAGAAGAGTGGAAACAAGTTTTTCATTTATGAATCTTTTGAATGGGAGTAGAAAACAGGAGTCCAAACCCAAGTCAAGCACAACCACATCATCGTCTAAATGGAGCACAAGCTTTCTCAATGCAGCTTCTAGCATTCGAGCTTCGGCTGAGGCTGGTGTGTCAAAGTTGAGTTCCTGGCAGACAGCAAGGGATGATGGGGTGGGACAGAGCCATAGCAGTGGTCAAGTGGAGCAGTGCCCTCAGTGTGGTGCCAAGTTTTCGTCAGTTACTACTTTGGTTGACCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACCGATCTGGAGGAGTGAAGGTTACAATTGATGCTTGTCCAAAGTGTAGTAGAGGATTTCGAGATCCTGTGGCCCTTGTGGAACATGTTGAGAGGGATCATGGTGGAAGTTCTAGATCATAG 855 0.4515 MGTPEFPDLGKHCAVSDCKLIDFLPFTCDRCDQVYCLTHRSYIKHHCTKANKQDVTVVICPLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVTKKKKCPVPGCREILGFSNTIKCRDCTVEHCLKHRFGPDHKCPGPRRVETSFSFMNLLNGSRKQESKPKSSTTTSSSKWSTSFLNAASSIRASAEAGVSKLSSWQTARDDGVGQSHSSGQVEQCPQCGAKFSSVTTLVDHVQKVHERSGNRSGGVKVTIDACPKCSRGFRDPVALVEHVERDHGGSSRS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1373 284 ProSitePatterns Zinc finger C2H2 type domain signature. 219 240 IPR013087 -
Aed8g1373 284 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Aed8g1373 284 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Aed8g1373 284 Gene3D - 86 175 IPR035896 -
Aed8g1373 284 Gene3D - 2 60 IPR035896 -
Aed8g1373 284 Gene3D Classic Zinc Finger 187 283 - -
Aed8g1373 284 SMART c2h2final6 217 240 IPR013087 -
Aed8g1373 284 SMART c2h2final6 255 278 IPR013087 -
Aed8g1373 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 283 IPR013087 -
Aed8g1373 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 245 IPR013087 -
Aed8g1373 284 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 283 - -
Aed8g1373 284 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Aed8g1373 284 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Aed8g1373 284 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Aed8g1373 284 ProSitePatterns Zinc finger C2H2 type domain signature. 257 278 IPR013087 -
Aed8g1373 284 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Aed8g1373 284 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Aed8g1373 284 Pfam AN1-like Zinc finger 101 139 IPR000058 GO:0008270
Aed8g1373 284 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 283 - -
Aed8g1373 284 Pfam C2H2-type zinc finger 218 240 - -
Aed8g1373 284 MobiDBLite consensus disorder prediction 154 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1373 Aed-Chr8 17880143 17883940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1373 1 284 C2H2 Transcription Factor Family AT2G41835 62.807 2.68e-124 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed8g1373 zf-AN1 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1373 - - gmx:100786272 532.332