Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1370 ATGGAGAAGATGGCAACTACTATCCACACCCCTCTCTTTCTCACTAACACTACTCTTCCAAAGACATCATCATCATCATCATCATCATCTTTTCAACCCTTTTTCTCTAACCAGCTACTTGGCCTCCCCTTATCCTCTTCTTCTGTTTCTTCTTTAACCGCCGCGAAACGAGTCTCCTCTTCTTCCTGGGCTTGCAGGCCCATCAAATGTTCCGTTTCCGAAGCCACAGAGCCCGTTACAGCAGAGAAGAAGAGGCAATTGCTTAGAAGAGGGGACGTGAGGAACATAGCCATTGTTGCTCACGTTGACCATGGGAAAACTACTCTCGTTGATGCCATGCTCAAACAAACTAAGGTATTTCGTGATAATCAATTTGTGCAGGAAAGGATCATGGACTCGAATGATTTGGAGCGCGAAAGAGGAATCACAATACTGAGTAAAAACACATCTGTCACCTATAAGGACGCGAAGATTAATATCATCGATACTCCAGGTCACTCTGATTTTGGGGGTGAAGTGGAGCGCATCTTAAATATGGTGGAAGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACAAGATTTGTCTTGAAGAAGGCTTTAGAGTTTGGTCACTCAGTTGTTGTGGTTGTGAATAAAATAGATAGGCCTTCTGCTCGCCCAGAATATGTTGTGAACTCTACTTTTGAACTCTTCATTGAACTAAATGCAACAGATGAACAGTGTGACTTTCAAGTAATATATGCAAGTGGCATAAAAGGGCAAGCAGGGTTGTCTCCTGATAATCTGGCAGAAGACCTTGGCCCATTGTTTGAATCCATCATGAGATGCATCCCCGGACCACGTATTGACAAAGATGGTGCCCTTCAAATGCTTGTTACAAATATTGAGTATGATGAACATAAAGGGCGTATAGCAATTGGGCGTGTGCAAGCTGGAGTTTTAGAAAAAGGCCTGGATGTCCGAGTATGTACTTCAGAAGATTCATGTAGATTTGGAAGAGTTAGTGAGCTTTATGTGTATGACAAATTCAATAGGGTCCCTGCAGATAGGGTGGAGGCAGGTGATATATGTGCAGTGTGTGGAATTACTGATATTCAGATTGGGGAGACAATTGCTGATAAAGTATCTGGGAAGCCACTACCTTCCATCAAGGTGGAAGAACCAACAGTGAAAATGTCCTTCTCCATAAACACTTCACCTTTTGTTGGCCGTGAGGGAAAGTATGTTACTAGTAGGAATTTAAGGGACAGGCTTTATCGTGAACTTGAGCGGAATCTGGCAATGAAAGTAGAAGATGGTGAAACAGCAGATACATTCGTTGTCAGTGGGCGTGGAACTTTGCATATCACCATACTCATAGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGACCTCCCAAAGTTATCAACAAGACGGTGAATGATAAACTGTTGGAACCGTTTGAGATTGCAACTGTGGAGGTACCAGAAGTGCACATGGGAGCTGTTGTTGAACTTCTTGGCAAGAGACGAGGACTAATATCGGAAGGAACCACGCTACTCAAATATAAGATCCCAACCCGTGGCCTTCTTGGATTGAGGAACTCAATTTTAACTGCCTCCCGGGGGACAGCTATTCTCAACACCATCTTTGATAGCTATGGGCCTTGGGCTGGCGAGATTAGTCAAATTATTGGCATTCATCAACGACCTGGGGACTTGTCCTTGAACGTCTGCAAGAAGAAAGCTGCAACCAATGTACGTTCCAACAAGGAACAAACAGTGATTCTTGATACACCATTGGACTATAGTCTGGATGATTGCATTGAATACATCCAAGAAGATGAACTAGTAGAGGTCACCCCCGCGAGTATCCGAATGTGCAAGAATCCAAAAATTGTAAACAAGAAAAGGTAG 1917 0.4345 MEKMATTIHTPLFLTNTTLPKTSSSSSSSSFQPFFSNQLLGLPLSSSSVSSLTAAKRVSSSSWACRPIKCSVSEATEPVTAEKKRQLLRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYKDAKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPEYVVNSTFELFIELNATDEQCDFQVIYASGIKGQAGLSPDNLAEDLGPLFESIMRCIPGPRIDKDGALQMLVTNIEYDEHKGRIAIGRVQAGVLEKGLDVRVCTSEDSCRFGRVSELYVYDKFNRVPADRVEAGDICAVCGITDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFVVSGRGTLHITILIENMRREGYEFMVGPPKVINKTVNDKLLEPFEIATVEVPEVHMGAVVELLGKRRGLISEGTTLLKYKIPTRGLLGLRNSILTASRGTAILNTIFDSYGPWAGEISQIIGIHQRPGDLSLNVCKKKAATNVRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPASIRMCKNPKIVNKKR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1370 638 CDD BipA_III 393 471 - -
Aed8g1370 638 Gene3D Translation factors 287 387 - -
Aed8g1370 638 Pfam Elongation factor Tu GTP binding domain 93 283 IPR000795 GO:0003924|GO:0005525
Aed8g1370 638 Gene3D - 91 286 IPR027417 -
Aed8g1370 638 PRINTS GTP-binding elongation factor signature 211 220 IPR000795 GO:0003924|GO:0005525
Aed8g1370 638 PRINTS GTP-binding elongation factor signature 159 169 IPR000795 GO:0003924|GO:0005525
Aed8g1370 638 PRINTS GTP-binding elongation factor signature 95 108 IPR000795 GO:0003924|GO:0005525
Aed8g1370 638 PRINTS GTP-binding elongation factor signature 139 147 IPR000795 GO:0003924|GO:0005525
Aed8g1370 638 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 91 286 IPR000795 GO:0003924|GO:0005525
Aed8g1370 638 Gene3D Elongation Factor G (Translational Gtpase), domain 3 388 476 - -
Aed8g1370 638 Gene3D bipa protein 562 613 IPR042116 -
Aed8g1370 638 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 595 638 - -
Aed8g1370 638 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 75 562 - -
Aed8g1370 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 293 IPR027417 -
Aed8g1370 638 CDD BipA_TypA_II 293 386 - -
Aed8g1370 638 TIGRFAM small_GTP: small GTP-binding protein domain 94 233 IPR005225 GO:0005525
Aed8g1370 638 SUPERFAMILY EF-G C-terminal domain-like 486 564 IPR035647 -
Aed8g1370 638 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Aed8g1370 638 CDD BipA_TypA_C 486 558 IPR035651 -
Aed8g1370 638 Gene3D - 477 561 - -
Aed8g1370 638 SUPERFAMILY Translation proteins 239 386 IPR009000 -
Aed8g1370 638 SUPERFAMILY EF-G C-terminal domain-like 391 475 IPR035647 -
Aed8g1370 638 CDD TypA_BipA 92 285 - -
Aed8g1370 638 PANTHER BNAC09G43450D PROTEIN 595 638 - -
Aed8g1370 638 PANTHER BNAC09G43450D PROTEIN 75 562 - -
Aed8g1370 638 Pfam Elongation factor G C-terminus 484 563 IPR000640 -
Aed8g1370 638 Pfam Elongation factor Tu domain 2 307 376 IPR004161 GO:0005525
Aed8g1370 638 SMART EFG_C_a 483 565 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1370 Aed-Chr8 17826202 17835620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1370 93 220 Eukaryotic Initiation Factors Gene Family AT3G22980 44.615 6.84e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1370 K06207 - gmx:100794574 1103.2