LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed8g1309	ATGACACCCACCCTGCGCACATTAGTATTTCCCCGTGCTTCGCACACCGTCTCTGCGTCTTCGATCTTTCTCTTCTCCTTTCTCAGCGCCACCTTTTTTATCCTGCGCACCCTTTCACTCAACCTTTTAGGGTTAAGGCTTCTTCTTCTTCTTTTTCTCTCTCCCAAACCTCTTTCTTATTCTTATTCTTCTTCGCTCTTTCGGAAAATTAGGGTTTGTTTTTCGTTCACCGTTATTTTCACGTTAGCGTATGGATCGCAAATCCAAACGCAAGCACTCGTTCTCTTACTCCACTCTCTTCAACCTCGAGTAGGTGGTAGGGCAAATCAAAGTAATGGAAATGTGCATGGAAGGGAAGGGAATTTGTTGAGAAAGAGGGCGTTGTCTCATAGCAGTGATACTGACGATGAGGAAAAGGAAAGATATTATGGGAAACACATGACACAGGAACGATATCGATCAATGCTTGGAGAGCATGTTCAGAAATACAAAAGGAGGCGTAAGGATGCCATGTCTAATCCTGCTCGAAATCGGGTTGATGTTCCTCTTGTCAAAAGTAACAATGGCTTAAAAGATCAAAAGTCAGGGAGTGATTACAGGGGAGCACCACATGCTGAAGAAAGGGCATTGGAATGGTTTCATGATCCAAGTAATCAGAAACCCGGAAACTGCAGTCATGCAGATTTCAAGCAGCGGATTATGTATGAACCTGCTTTTTTGGACATTGGGAATGGTATCTCTTACAAGATTCCTCCAATTTACGATAAGTTGGCCCCAATGCTGAACCTTCCAAACTTTTTGGATATCCATGTGGAGGATTTTTACTTAAAGAGTACCTTGGACTTGGGGTCCTTGGCTGCAATGAGGGCTGCTGACAAAAGGTTTGGGACTAGAACCCAAGCAGGCATGGGGGAACCCCTATCCCAATATGAATCACTTCAGGCAAGAATAAAGGCCATGCCAGCTTCTAATTCACCTCACAAATTCAGTCTGAAAGTGTCTGATGGTGCTTTCAATTCATCCATTCCGGAGGGTGCCGCAGGAAGCATAAAGCGATCTATTTTATCTGAGGGTGGTGTATTGCAGGTTTTTTATGTTAAGGTTTTGGAAAAGGGTGACACATATGAGATAATTGAGCGAAGCCTACCAAAGAAGCATAAGGTAAAGAAAGATCCTGCTTTGATAGAGAAGGAAGAAATGGATAGAATTGGAAAGATTTGGATAAACATTGTTAGAAGAGACATACCAAAGCATCATAGGAATTTTACTACTTTTCATCGAAAGCAGCTCATTGATGCCAAGAGGTTCTCAGACTACTGTCAAAGAGAGGCATGTGCTATCTCCCTTCCCACATTTTTCCTTTGTTTTATCTCACATTACTTTTTGGTAAAAATGAAAGTTAGTAGATCACTCAAATGGATTAAGGGTGCTAACATTCGCACCCGGAAAGTAGCTAGAGACATGTTGCTGTTCTGGAAACGAGTAGATAAGGAGATGGCTGAAGTCAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAAGAGCTTCGTGAAGCTAAGAGGCAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAGTGTACACTCTTCAGATGCATTACCCTTGGTAGATGATGAAACAAATGATCAAGATGCACTTGTTGACTCTTCAGATGCTGGGCTTAATGAGGAGGAAGATCTGGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAACAGAAAATGTTGACTAATGCTTTTGACAGTGCATGCTTGAGGTTCCGCCAGGTGGATGAAACTGATTCACTTACACAGCTAGAAGGAGGAAGTAACATTGATTTGCAAACCCCATCAACCATGCCAGTGGTATCCACAGTTCAGACACCAGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTGAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGCATACTTGCTGATGAGATGGGACTTGGAAAGACCATCCAGGCTATGGTGTTTTTAGCCCATTTGGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTGAACAATTGGAATGAGGAACTTGAACGCTTCTGCCCTGAGCTTAAAAGACTTCCATACTGGGGAGGGCTTTCAGAGCGGGCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAGGCTAAATTCCACATTCTCATCACAAGCTATCAGCTATTAGTAACTGATGAGAAGTATTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCAACTAGTATAAGGTGGAAGACACTTCTCAGCTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCTGTTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTTATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTCTCAAAAGGAATTGAGAATCATGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAGTAGATTGCATTCAATACTAAAACCTTTCATGCTGCGACGTGTTAAAAAAGATGTAATTTCTGAGCTGACTATGAAAACTGAGGTTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAGGCATTCTATCAAGCTATTAAGAACAAGATATCTCTTGCCGGGTTGTTTGATGGTAATCGTGGGCTCAATGACAAGAAAGTTATGAGTTTAATGAATATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAACGAAGGAAGCACATACTTTTACTTTGGAAAAATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGTTGGAGGATATATACTATCCTGGTGGGCATAACCCGATTTCATATGAGATACCAAAACTTGTCTATCAAGAGATTATGCAAAGTTCTGAAACTTTCAGTTCAGCTGTTGGTCATGGTATCTGCAGGGAATCTTTTCAGAAACATTTTAATATATTTAGACCTGAAAATGTTCATCGATCTATCTTCTCAGAAGATATTATTGTTAAAAGTGGAAACTTTGGTTTTACCCATCTGATGGATTTGTCTCCCCAAGAGGTGGCATTTATGGCCACTGGTTCTTTTATGGAGCGACTATTATTTTCTATGATGAGATGGGAACAGAAGTTCCTTGATGAAGTTTTAGACTTTCTTATAGAGACCACAATAGGTGATCCTGAATGTAGTTACCTTGAGAAAGGTAAAGTGAGAGCTGTTTCACGAATGTTATTGTTGCCATCAAGATATGAGACCAAGTTTCTTCAGAAAAAGTTTGCAACTGGACCCATGAATGCTCCTTTTGAGGCCTTGGTGGCCTCACATCAAGATAGGCTTTTATCAAATGCAAGGCTTCTTCACTCGGCATACACATATATCCCACCGACTAGAGCTCCCCCAATTCGTGCTCACTGCTCAGACAGAAACTTCTCCTATAAAATGATTGAGGAATTACATGATCCTTGGGTTAAGAAGTTGTTTGTGGGATTTGCGCGTACATCTGAATGTAATGGGCCTAGAAAGCCTGATAATCCTCCTCATTTAATTCAAGAGATTGATTCTGAACTACCCATTTCACGGCCTACTGCACTTCAGTTAACGCATAGAATTTTTGGCTCTTCACCACCTGTGTGGAATTTTGATCCAGCAAAGTTGCTCACTGATTCTAAGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGGGCAGAAAATCATCGTGTTCTCTTATTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAGATATTTTAGACTTGATGGGTCATCCACAATTCAGGATCGCAGAGACATGGTCAGAGACTTCCAGCACAGGAATGATGTTTTCGTGTTCTTACTTAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTAGATCTACAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGTCTTATATGTAAAGAAACAGTTGAAGAGAAGATTCTTCATAGAGCAAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCCGAGGATGTTGTATCTTTGCTTCTCGATGATGTTCAATTGCAACAGAAATTAAAGGAAATTCCTCTACATGTAAAGAGTAAACAAAAGAAAAAAGCTATGAAGGCTATACGGATAAATGAGGAAGGTGATGCATCTTTGGAGGATCTAACAAACTCTCTAGACCAGGGAACTGCAGATGATGATATATCCATGGAACCGGAGGGACCAAAGTCCAGTATTAAAAAGACAAAAACAGCTACTGACAAGCATAAACCAAGCCCAAAAAATTCTCAGAAGAAGATGAAAGGCAGTGTGTCTAATAGATAA	4605	0.4102	MTPTLRTLVFPRASHTVSASSIFLFSFLSATFFILRTLSLNLLGLRLLLLLFLSPKPLSYSYSSSLFRKIRVCFSFTVIFTLAYGSQIQTQALVLLLHSLQPRVGGRANQSNGNVHGREGNLLRKRALSHSSDTDDEEKERYYGKHMTQERYRSMLGEHVQKYKRRRKDAMSNPARNRVDVPLVKSNNGLKDQKSGSDYRGAPHAEERALEWFHDPSNQKPGNCSHADFKQRIMYEPAFLDIGNGISYKIPPIYDKLAPMLNLPNFLDIHVEDFYLKSTLDLGSLAAMRAADKRFGTRTQAGMGEPLSQYESLQARIKAMPASNSPHKFSLKVSDGAFNSSIPEGAAGSIKRSILSEGGVLQVFYVKVLEKGDTYEIIERSLPKKHKVKKDPALIEKEEMDRIGKIWINIVRRDIPKHHRNFTTFHRKQLIDAKRFSDYCQREACAISLPTFFLCFISHYFLVKMKVSRSLKWIKGANIRTRKVARDMLLFWKRVDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSVHSSDALPLVDDETNDQDALVDSSDAGLNEEEDLEEAELKKEALKAAQEAVSKQKMLTNAFDSACLRFRQVDETDSLTQLEGGSNIDLQTPSTMPVVSTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERAVLRKSINPKDLYRREAKFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLSRLHSILKPFMLRRVKKDVISELTMKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDGNRGLNDKKVMSLMNIVIQLRKVCNHPELFERNEGSTYFYFGKIPNSLPPPPFGELEDIYYPGGHNPISYEIPKLVYQEIMQSSETFSSAVGHGICRESFQKHFNIFRPENVHRSIFSEDIIVKSGNFGFTHLMDLSPQEVAFMATGSFMERLLFSMMRWEQKFLDEVLDFLIETTIGDPECSYLEKGKVRAVSRMLLLPSRYETKFLQKKFATGPMNAPFEALVASHQDRLLSNARLLHSAYTYIPPTRAPPIRAHCSDRNFSYKMIEELHDPWVKKLFVGFARTSECNGPRKPDNPPHLIQEIDSELPISRPTALQLTHRIFGSSPPVWNFDPAKLLTDSKKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQHRNDVFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKLKEIPLHVKSKQKKKAMKAIRINEEGDASLEDLTNSLDQGTADDDISMEPEGPKSSIKKTKTATDKHKPSPKNSQKKMKGSVSNR	1534

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed8g1309	1534	MobiDBLite	consensus disorder prediction	1479	1534	-	-
	Aed8g1309	1534	Pfam	DNA-binding domain	402	549	IPR020838	GO:0003677
	Aed8g1309	1534	ProSiteProfiles	DBINO domain profile.	406	550	IPR020838	GO:0003677
	Aed8g1309	1534	MobiDBLite	consensus disorder prediction	1496	1520	-	-
	Aed8g1309	1534	Pfam	Helicase conserved C-terminal domain	1276	1386	IPR001650	-
	Aed8g1309	1534	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	889	1450	IPR027417	-
	Aed8g1309	1534	CDD	SF2_C_SNF	1265	1397	-	-
	Aed8g1309	1534	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	1277	1461	IPR001650	-
	Aed8g1309	1534	Pfam	SNF2-related domain	674	960	IPR000330	GO:0005524\|GO:0140658
	Aed8g1309	1534	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	642	887	IPR027417	-
	Aed8g1309	1534	Coils	Coil	576	603	-	-
	Aed8g1309	1534	Gene3D	-	634	912	IPR038718	-
	Aed8g1309	1534	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	671	842	IPR014001	-
	Aed8g1309	1534	Coils	Coil	497	536	-	-
	Aed8g1309	1534	Gene3D	-	1223	1494	IPR027417	-
	Aed8g1309	1534	SMART	ultradead3	655	850	IPR014001	-
	Aed8g1309	1534	SMART	helicmild6	1303	1386	IPR001650	-
	Aed8g1309	1534	PANTHER	CHROMATIN-REMODELING ATPASE INO80	128	1517	IPR031047	GO:0005634\|GO:0006281\|GO:0006338\|GO:0006351\|GO:0016887\|GO:0031011
	Aed8g1309	1534	PANTHER	HELICASE SRCAP-RELATED	128	1517	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed8g1309	Aed-Chr8	16282714	16295570	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed8g1309	679	974	RAD5 or RAD16-like Gene Family	AT5G22750	27.019	1.44e-22	103

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Aed8g1309		SNF2_N	6e-65	CL0023

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed8g1309	K11665		-	gmx:100796167	2464.11