Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1301 ATGGCAAGAGTTGCCAATTTGCATTTATCGGATATCGTACTGAAGATGGAGCTCGGGAAGCCATTCAATATTTCAACAATAATTGCCTTCGCACATCTAAAATTGTTTGTGAGGTCGGTGGCTAGAAAACATGGGGATGAAAATCTTCCTTGTCCATGGAGTCGACATTCGAAGAAGAAAGATGATGATAAAGTGACCGCTCTGGATGTGGAGAAACGTGCTAGGGCTAAGGGACAAGGAGAGAATTCAAAGGGCAGTGTTGATGTTGATGACCTGCAGCTTCAGGATTTTCTTGAGGTCATGCAGCCTTGGGTTAAGTCTGAAATGTGGGTGAATGATACATCGATTGTGACCAATGTTGGCATCAAACCAGCAGTGCCAAATAAGGAAGATGAAGGGGCATCGGTTGTAACTGATCAGAGTGGCTCATTAGAAGATGGATTTCCAGAGAATTCTGAACCCAAAAATGAGGAGGAACTGGAAGAACATTTCAGTCGCTTTGAAAGTATCTCACAGGTTCATATAGTTGTTAATAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTTTATACAGCTCCAGATATGGCAACCAGGAACAATGTTTTGAAGGACCAAAGCTCTAAAACCCTCAAACAACAGAGAGAGGAAAAAAGGAAAGCAAATGAAGCTAGCGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACACATTTGATGGGTGCAAAGAAGATTTGTTTTCTTGTAATGGAATTAACATTACTGTTGCTGGTTGTGGAAAACATTGCTCGGAAATATGGTGTTAATAAAAGTGATTTTCTTGACCGAGAAGCTGATGATCTTGCTGTACGTATTGCTCTGGGAGAGACTCAAAACTTGCCATATGGTTCTACAGAAAATGAACTTTCAAAGATGTGTGGGAAATATGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCACTGGTTGTTTTCCTCGAACCAGCGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTACAATAACTGGACTCAATCTGTTGGTTGGGAGTGGAAAGTTCTTAACTTGTTTCATATTTCAATTCAATGTAGAGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATGTAAACATAATGAAATGAATGGTGCAATTGGTGAAAATGATGCCAAGAGGCAGATATTGGAGCAACAAGTGGAAAGAATTACAGATGTGGATATTGATCCAGACAGAGTACAGCTTGAAAACCAACCCATACCAGTGCGGTTGGACCTGAAATCTGTCCGGGTCATACTGGATATGTATTCCCTGGGAGGAGAGGCTCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTACAGATGAAAGTCTGAGGAAACATTTTAGTGAACACATGAAAGATGGAAAAATTTTGAGTGCCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTCTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTACAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTCATGTCAAAAATGATGGGCAAAAACAAAAGACAAATGAGAAGGACAGGAGTTCAACAAAATTGCTCATAAGAAATCTTGCTTTTGAGGCAACAGAGAAGGATCTGAGACTATTGTTTAGCCCATTTGGCCAGCAAAAACTTGTTGATTCAGTAATTAAAAGCTTAAGGTTACCAATGAAGTTTGGAAACCATAGAGGGTTTGCTTTTGTAGAGTATGTTACTCAGCAAGAGGCACAAAATGCCCTGAAAGCACTTTCAAGCACCCATCTCTATGGGAGGCATCTGAGTGGTTGTTTTAGAGATGTGGACGTTGGCCTTGCACGTTCCAGAATCCCTACAAAGGCCAACCATAATGCACACATAACAAATATAAAAGGGACCACTTACCCTCGCCTTCTTCACTTCTTAGGCATGAATGGGTCTTCGGTCTTCACTACTGCAATTGGCACCGAGAATGGGAGTTGA 2088 0.409 MARVANLHLSDIVLKMELGKPFNISTIIAFAHLKLFVRSVARKHGDENLPCPWSRHSKKKDDDKVTALDVEKRARAKGQGENSKGSVDVDDLQLQDFLEVMQPWVKSEMWVNDTSIVTNVGIKPAVPNKEDEGASVVTDQSGSLEDGFPENSEPKNEEELEEHFSRFESISQVHIVVNKDTKRSKGIAYILYTAPDMATRNNVLKDQSSKTLKQQREEKRKANEASGDTRAWNSLFMRPDTHLMGAKKICFLVMELTLLLLVVENIARKYGVNKSDFLDREADDLAVRIALGETQNLPYGSTENELSKMCGKYGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYNNWTQSVGWEWKVLNLFHISIQCRDAPLYLEWAPSNILSQSSTCKHNEMNGAIGENDAKRQILEQQVERITDVDIDPDRVQLENQPIPVRLDLKSVRVILDMYSLGGEARSLFVKNLNFKTTDESLRKHFSEHMKDGKILSAKVKKHLKNGKNVSMGFGFLEFDSPETATNVCRDLQGTVLDSHALILQPCHVKNDGQKQKTNEKDRSSTKLLIRNLAFEATEKDLRLLFSPFGQQKLVDSVIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLSGCFRDVDVGLARSRIPTKANHNAHITNIKGTTYPRLLHFLGMNGSSVFTTAIGTENGS 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1301 695 Gene3D - 549 654 IPR012677 -
Aed8g1301 695 MobiDBLite consensus disorder prediction 202 226 - -
Aed8g1301 695 SUPERFAMILY RNA-binding domain, RBD 156 200 IPR035979 GO:0003676
Aed8g1301 695 CDD RRM5_RBM19_like 460 541 IPR034423 -
Aed8g1301 695 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 560 650 IPR000504 GO:0003723
Aed8g1301 695 SUPERFAMILY RNA-binding domain, RBD 296 361 IPR035979 GO:0003676
Aed8g1301 695 MobiDBLite consensus disorder prediction 210 226 - -
Aed8g1301 695 Gene3D - 457 548 IPR012677 -
Aed8g1301 695 Gene3D - 294 409 IPR012677 -
Aed8g1301 695 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 219 IPR000504 GO:0003723
Aed8g1301 695 PANTHER RNA-BINDING PROTEIN 19-RELATED 39 241 - -
Aed8g1301 695 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 262 650 - -
Aed8g1301 695 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 200 IPR000504 GO:0003723
Aed8g1301 695 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 352 IPR000504 GO:0003723
Aed8g1301 695 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 562 636 IPR000504 GO:0003723
Aed8g1301 695 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 462 536 IPR000504 GO:0003723
Aed8g1301 695 PANTHER RNA-BINDING PROTEIN 19-RELATED 262 650 - -
Aed8g1301 695 SMART rrm1_1 295 358 IPR000504 GO:0003723
Aed8g1301 695 SMART rrm1_1 461 539 IPR000504 GO:0003723
Aed8g1301 695 SMART rrm1_1 147 221 IPR000504 GO:0003723
Aed8g1301 695 SMART rrm1_1 561 639 IPR000504 GO:0003723
Aed8g1301 695 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 39 241 - -
Aed8g1301 695 MobiDBLite consensus disorder prediction 47 66 - -
Aed8g1301 695 MobiDBLite consensus disorder prediction 128 160 - -
Aed8g1301 695 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 460 543 IPR000504 GO:0003723
Aed8g1301 695 CDD RRM4_RBM19_RRM3_MRD1 296 384 - -
Aed8g1301 695 Coils Coil 205 225 - -
Aed8g1301 695 CDD RRM6_RBM19_RRM5_MRD1 560 636 - -
Aed8g1301 695 Gene3D - 152 233 IPR012677 -
Aed8g1301 695 SUPERFAMILY RNA-binding domain, RBD 459 636 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1301 Aed-Chr8 16148597 16158010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1301 462 636 Eukaryotic Initiation Factors Gene Family AT4G34110 29.891 6.72e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1301 K14787 - gmx:100796243 645.195