Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1298 ATGGGGGGTTTCCATGGTGCAGTAGAGGAAAAGGCGATGAGGAGCATACATGTACATCAACCTTGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAGTAACTGCGTACTTGCTCCTTATTTCCCAACCGATCAGCTTGACAAATTTGCTGGAGTGCACAGAGTCTTCGGTGCTAGCAACGTTATCAAAATGATTCAGATGGTTGAGGAAACAAAGAGAGAGGATGCTGTTAAAGCCATGGTGTACGAGGCGAGGGCAAGGCTTAGAGACCCAGTTTATGGCAGTGCTGGAGCTATTTACCAGTTACAGAAGATGATTGAGGAGTTGAAGGCACAGCTGGAGTCCATAAAAACTCGGGTATCAGAACTGAGACAACAAAAAGATGACTTGTTAAGTGGTATTCTTAACAACAACCCAGCTCCCGTCAATGATCCTATCATCTTTGATGGTTTGTCGGCACAAGACTTCGATCATCTCATGGCTTCAGAATTCAGATCCATTTGA 507 0.4576 MGGFHGAVEEKAMRSIHVHQPCAACRMLRRRCDSNCVLAPYFPTDQLDKFAGVHRVFGASNVIKMIQMVEETKREDAVKAMVYEARARLRDPVYGSAGAIYQLQKMIEELKAQLESIKTRVSELRQQKDDLLSGILNNNPAPVNDPIIFDGLSAQDFDHLMASEFRSI 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1298 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 162 - -
Aed8g1298 168 Pfam Lateral organ boundaries (LOB) domain 21 118 IPR004883 -
Aed8g1298 168 ProSiteProfiles LOB domain profile. 20 121 IPR004883 -
Aed8g1298 168 Coils Coil 100 127 - -
Aed8g1298 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 13 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1298 Aed-Chr8 16049438 16050031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1298 18 137 AS2 family AT1G07900 55.833 9.06e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed8g1298 LOB 6.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1298 - - gmx:100803085 221.476