LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed8g1258	ATGGCAAAACCTATATCTAAAACAGGTTCGCGTAAAAATGTACGTATTGGTTCGCGTAAGCATACTCGTAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTCAACAATACTATTGTGACTGTTACAGATGTACAAGGTTGGGTGATTTCTTGGTCCTCCGTCGGGACTTGTAGATTCAAGGGAAATGCTATTCGAACAGTATCGGATCAAGGCATGCAACAAGCAGAAGTCATGATAAAAGGTCCTAGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAAAAGTGGTATACTATTAAATTTTATACGAGATGTAACTCCTATGCCACATAATGGATGTAGGTCTCCTAAAAAAAGACGTGTGTAA	375	0.3893	MAKPISKTGSRKNVRIGSRKHTRKIPKGVIHVQASFNNTIVTVTDVQGWVISWSSVGTCRFKGNAIRTVSDQGMQQAEVMIKGPSLGRDAALRAIRKSGILLNFIRDVTPMPHNGCRSPKKRRV	124

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed8g1258	124	Gene3D	Ribosomal protein S11	8	124	IPR036967	GO:0003735\|GO:0005840\|GO:0006412
	Aed8g1258	124	PANTHER	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	1	123	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Aed8g1258	124	ProSitePatterns	Ribosomal protein S11 signature.	92	114	IPR018102	-
	Aed8g1258	124	MobiDBLite	consensus disorder prediction	1	22	-	-
	Aed8g1258	124	PANTHER	30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC	1	123	-	-
	Aed8g1258	124	SUPERFAMILY	Translational machinery components	23	124	-	-
	Aed8g1258	124	Hamap	30S ribosomal protein S11 [rpsK].	3	124	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Aed8g1258	124	PIRSF	RPS11p_RPS11a_RPS14e_RPS11o	6	124	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Aed8g1258	124	Pfam	Ribosomal protein S11	28	123	IPR001971	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed8g1258	Aed-Chr8	15068468	15068884	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed8g1258	1	114	Cytoplasmic Ribosomal Protein Gene Family	AT3G52580	29.197	2.05e-08	48.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed8g1258	K02948		-	gmx:3989330	223.787