Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1256 ATGAATAAAGGGTCACTTGATTATTGGAGGAATTACTTTGGAGATGCGAACTCTGATATATTTGGCATCATTGACCATGCGATTATGGTGGCTGCTTCTGATTGCCCCAAGGAGTTCAGGTTGAGGAGAGATGGAATTGCAGAGAGGTTGTTTTCTTGCAGATTGAGTCGATGTTTCGGATGCGAGAGGGTGGAGTTGGCTGTTTCAGTGGATCATGATGGCGGCGGTGGTGGCGATGGTTGCAAGAGTGGCTTTGATGGAGATGGTGCTGAGTTTGAGTTTGAAGCGGGTGCAAGTAAAGAGAGCAAGGTCAATAGTGACAGAGATGATCCCGGAGAGATGAACATGAACACGAACACAAACATGAATCAAGTTAGCAATTACAGCTATGGGGATGCTGAGGCATTGACTGACGAGATTGAAGAGGAGTCTCAATATGTTGAGGAGTCTGATTCAGTGTTGTTTGATTCATTGAGGAGGCTTCAGCTGATGGAACTCACAGTGGATCTTCTGAAGGAAACTGAGATTGGAAAGGCTGTCAATCCTCTTCGAAAGCATGAACGAAGAGACATTTGTTCAGAAGGAACTCCAGATTCAGTAAATCCATCTGTTGTTGATGATGAAGAAGGTCTTCCATTACCTCCTATGGATGAAGGGGCTTTATTTGCAGCTCCAACTGGTTCTATGGAACTCTCACAGGTACTTCAATATCCTCAACACAGTGGGGAATTCATCAAGAACCGTGAACACGGAAGAGGACCATCTCTGAACAGTCAAAATACAGCAAAGAGGAAGCCTCAGGCATCAAATGAGGCAAACATCGTTTCCAAGGACAGTAAGGGTCAGCAAGCAAAGAAAAATGAGGCTGCAGCGAGGCCAAATAAACCAATAATTGCTGATTCTGGCCCTAACAGACTACCAAAATCAACCATGCAGAAGAAAGGCAATATTGAGCCAATGATGCAACAAAATATAGTGAAGAGTGCTATCCCAAAAAATCCTCACATTCGTCAGCTAGATAAACTCAAGTGTTCGGACGATGCTGCTGCGCAAGTGAAGTTAGAAGCCAGTAAGAGGAAACTTCAGGAGCGTTATCAACAAGTTGAAAATGCTAAGAGGCAGCGGACGGTTCAGGTTATGGAGTTGCATGACCTCCCAAAGCGGGGGATTGGCCACCGAAATCCGTATGTCAAACCCGGAAATCACAAGAGGCAATCAGGTCATGGACGAAGATAG 1236 0.4506 MNKGSLDYWRNYFGDANSDIFGIIDHAIMVAASDCPKEFRLRRDGIAERLFSCRLSRCFGCERVELAVSVDHDGGGGGDGCKSGFDGDGAEFEFEAGASKESKVNSDRDDPGEMNMNTNTNMNQVSNYSYGDAEALTDEIEEESQYVEESDSVLFDSLRRLQLMELTVDLLKETEIGKAVNPLRKHERRDICSEGTPDSVNPSVVDDEEGLPLPPMDEGALFAAPTGSMELSQVLQYPQHSGEFIKNREHGRGPSLNSQNTAKRKPQASNEANIVSKDSKGQQAKKNEAAARPNKPIIADSGPNRLPKSTMQKKGNIEPMMQQNIVKSAIPKNPHIRQLDKLKCSDDAAAQVKLEASKRKLQERYQQVENAKRQRTVQVMELHDLPKRGIGHRNPYVKPGNHKRQSGHGRR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1256 411 Pfam TFIIS helical bundle-like domain 158 187 IPR017923 -
Aed8g1256 411 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 149 192 IPR035441 -
Aed8g1256 411 MobiDBLite consensus disorder prediction 382 411 - -
Aed8g1256 411 SMART TFS2_5 137 202 IPR003617 GO:0005634
Aed8g1256 411 MobiDBLite consensus disorder prediction 245 307 - -
Aed8g1256 411 ProSiteProfiles TFIIS N-terminal domain profile. 135 208 IPR017923 -
Aed8g1256 411 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 410 - -
Aed8g1256 411 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 410 IPR044805 -
Aed8g1256 411 MobiDBLite consensus disorder prediction 397 411 - -
Aed8g1256 411 Coils Coil 351 378 - -
Aed8g1256 411 CDD TFIIS_I 149 196 - -
Aed8g1256 411 MobiDBLite consensus disorder prediction 252 280 - -
Aed8g1256 411 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 195 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1256 Aed-Chr8 14844725 14850222 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Aed8g1256 Med26 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1256 - - gmx:100775579 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1256 8 14844725 14850222 Aed8g1256 8 14844725 14850222 ECH