Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1242 ATGTCGGATGCACTTTTTGTTGGAGGTGTTGAGAGTAGAAAGCTCAAGCGTAAGATTGAGGAGGCATCTTCCACCGATGTTGTAGATCCAGAGTACTTATTATCTCTGAATCTCGGCAATAACAAAGTGGTTGGCGAATCCTCAACTAATTCATTATGTAAGTCATTGAAAAGTCTTAAGGAGTCACCGGGATTTGATTCAAATCTTATGGAAAACACTAATCATCAAGTGATTGTGCCTAAGCAACGCCAATTCTCTTGCAAGTTTTGTGATAAGAAATTTCCAAGCTCTCAAGCTCTAGGGGGACACCAAAATGCTCATAGGCGTGAAAGAGTTCTATCAAGGATGGATAAAGATTTGGGAACTTTTGGATTTGGTGCTCACATGCACGCATACTCATCCATTCCACATCATTATCCCTTTCAAGGACCAATACCCCCTTATTATGGGGCTAGCATGCACCCTATGGCTCACATGTCAACCATGCTCTGGCCACATTTTGTACCTAGTTTTGCCAACCAACGATTTGGAATGACCAATCCTTGGGGTATGGCTGCTGAAACTCCACAGAATATGTATCACATGGATGAGGGATTTGGTTCTGGGCATAATCAAGTTCCTTCACTTGATGTAGCTCATAGAGCTACCATGGCTCATTCTGGTCTTAGTGGCCTTCTAGGAAACCAGTATACTAGGAACCAATAA 705 0.4241 MSDALFVGGVESRKLKRKIEEASSTDVVDPEYLLSLNLGNNKVVGESSTNSLCKSLKSLKESPGFDSNLMENTNHQVIVPKQRQFSCKFCDKKFPSSQALGGHQNAHRRERVLSRMDKDLGTFGFGAHMHAYSSIPHHYPFQGPIPPYYGASMHPMAHMSTMLWPHFVPSFANQRFGMTNPWGMAAETPQNMYHMDEGFGSGHNQVPSLDVAHRATMAHSGLSGLLGNQYTRNQ 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1242 234 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Aed8g1242 234 Gene3D Classic Zinc Finger 61 120 - -
Aed8g1242 234 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 234 - -
Aed8g1242 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Aed8g1242 234 SUPERFAMILY beta-beta-alpha zinc fingers 82 112 IPR036236 -
Aed8g1242 234 PANTHER ZINC FINGER PROTEIN JAGGED 1 234 IPR045320 GO:0003700
Aed8g1242 234 Pfam C2H2-type zinc finger 85 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1242 Aed-Chr8 14229946 14230650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1242 68 158 C2H2 Transcription Factor Family AT5G10970 33.333 8.78e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed8g1242 zf-C2H2_6 4.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1242 - - gmx:102663144 368.237