Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1229 ATGTCAAACAGTAGGAACACTCATTGGTGTTACAGTTGCAGGAGGCCAATTAGACTGGGAAGGCGAGATGTGGTTTGTCCTAGCTGTAATGAGGGATTTATTCATGAACTAAATGATATGGTGCATGTTAATCCTTTTGATGTCTTTGGAATGGACAACATTGAAGAACGTGATCAAAGGCTTGGTCTCATGGAAACCTTCTCTGCCTTGATGAGGCATCAAATGGCAGATAGGGGCCGAAGTCGTGACATCAGGGTGCGGACAGATTCAAATCTTGAACACAGCACAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATACCATTCAGATTGTCCGGACATGGTGGCTTTGAAGCTCTCTTTAATGGTGCTCCAGGAATCGGTCTGACACGAGGTAACACAGGCGATTATTTTATTGGTCCTGGTCTAGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGTCCGCCGCCAGCAGCAAGGTCCTCAATAGATGCAATGCCTACAATCAAAATCACACAGAGGCATCTTCGTTCAGATTCACACTGTGCAGTGTGCAAAGATAGATTTGAGCTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTATATCATTCAGATTGTATTGTTCCATGGTTAGTCCAGCATAACTCCTGTCCTGTTTGCCGTCAAGAACTGCCGCCACAACAAGGATTATTGAGTAATAGCCGCAGCAGCGGTGCAAATGGTAGAGCTAGAAGTGCAAGGGTGAGTAGTAGTGGTAGGGAGAGCCAGGGAAGGAGAAATCCGTTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCTCATTCTAGCAGTAATGATGAAGCAACCGGAAGCAGCACAACACCAACACCAACTATCCCTGAGAATAGCCATCGTCATCATCATGCAGGGTATTCTGGGTGGCCGTTTGAATGA 951 0.4574 MSNSRNTHWCYSCRRPIRLGRRDVVCPSCNEGFIHELNDMVHVNPFDVFGMDNIEERDQRLGLMETFSALMRHQMADRGRSRDIRVRTDSNLEHSTGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFIGPGLEELFEQLSANNRQGPPPAARSSIDAMPTIKITQRHLRSDSHCAVCKDRFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQQGLLSNSRSSGANGRARSARVSSSGRESQGRRNPFSFLWPFRSSHSHSSSNDEATGSSTTPTPTIPENSHRHHHAGYSGWPFE 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1229 316 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Aed8g1229 316 MobiDBLite consensus disorder prediction 237 265 - -
Aed8g1229 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 298 - -
Aed8g1229 316 SMART ring_2 186 226 IPR001841 -
Aed8g1229 316 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Aed8g1229 316 MobiDBLite consensus disorder prediction 277 299 - -
Aed8g1229 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 298 - -
Aed8g1229 316 MobiDBLite consensus disorder prediction 237 264 - -
Aed8g1229 316 SUPERFAMILY RING/U-box 166 236 - -
Aed8g1229 316 CDD RING-H2_RNF126_like 186 227 - -
Aed8g1229 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Aed8g1229 316 MobiDBLite consensus disorder prediction 277 316 - -
Aed8g1229 316 Pfam Ring finger domain 185 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1229 Aed-Chr8 13773237 13776016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1229 121 231 C3H Transcription Factor Family AT5G01980 45.217 8.61e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1229 K11982 - gmx:100787523 560.451