Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1216 ATGAACTATACCGAGCAGCAATTAACAGCAGCTGTTGTTTCTGATGGATTACGGCCAGTCCTTGCTGCTGAGGACTTGGGTATACCGTCAATATTATTATCAATGATAAACAAATGCTGGGGTGCAAATCCTAATAACAGACCTGCTTTTGATGACGTTGTCAAGGAACTTGATTTAATTATGGAGCACATATACCACCCAACACTGTCTTGGGGATCTTATGCTACCTGTGGGAGAAGGGAGACTATGGAGGATACACATTTCATTCTGCCTCATATTTGCAATGAAAAGGATGTCTATGCTTTTGGTATCTTTAATGGCCATAGGGGTGCAGCAGCTGCTGAGTTTTCTTCTAGAGCTGTACCTGCAGTTTTGCAGACTGCAGGTTTTATGGGCAGTCCTGCTAGTGCACTAGCGGAAGCATTCATTAGGACAGATGCTGCCTTCAGAAAAGAGCTTGATTCTTATCGCAAATCCAACAGATCTGTCCAGAAGGATTGGCATCCTGGGTGTACAGCAATTGCTTCTCTTATAGTCAGAAACAAGCTATTTGTTGCCAACATTGGTGATTGCAGGGCAATCTTATGTCGTGCTGTTGATACTTGGAGGATCGGTCTTCCTGCACTTCAGGAGGGGAGCTACTATGTCTATAGCCATAACTGGTCTGATACACAGCAATGCCCATTTGGTTCAGTTACTCGTTCTATTGGTGACGATGATCTGAAGCTTGCTGTAACTGCAGAACCAGAGATAACTGAGAGTACCTTGTGTCCAGAGGATGAATTTCTGGTCATGGCTAGCGATGGCCTGTGGGATGCCATCAACAGTATGGAGGTCATAAATATAATAAAAGACACTGTTAAAGAGCCTGGAATGTGCTCTAAGAGGTTGGCTACTGAAGCAGTGGAACGTGGCAGCAAAGATAACATCACAGTTATAGTTGTTTTCTTACGCCCTGTATCTACAGCAGAGAGAATTTATTAG 984 0.437 MNYTEQQLTAAVVSDGLRPVLAAEDLGIPSILLSMINKCWGANPNNRPAFDDVVKELDLIMEHIYHPTLSWGSYATCGRRETMEDTHFILPHICNEKDVYAFGIFNGHRGAAAAEFSSRAVPAVLQTAGFMGSPASALAEAFIRTDAAFRKELDSYRKSNRSVQKDWHPGCTAIASLIVRNKLFVANIGDCRAILCRAVDTWRIGLPALQEGSYYVYSHNWSDTQQCPFGSVTRSIGDDDLKLAVTAEPEITESTLCPEDEFLVMASDGLWDAINSMEVINIIKDTVKEPGMCSKRLATEAVERGSKDNITVIVVFLRPVSTAERIY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1216 327 ProSiteProfiles PPM-type phosphatase domain profile. 70 317 IPR001932 -
Aed8g1216 327 SMART PP2C_SIG_2 85 317 IPR001932 -
Aed8g1216 327 PANTHER ALPHABET, ISOFORM E-RELATED 232 327 - -
Aed8g1216 327 PANTHER ALPHABET, ISOFORM E-RELATED 71 198 - -
Aed8g1216 327 PANTHER ALPHABET, ISOFORM E-RELATED 14 64 - -
Aed8g1216 327 CDD PP2Cc 72 317 IPR001932 -
Aed8g1216 327 Gene3D - 63 321 IPR036457 -
Aed8g1216 327 PANTHER PROTEIN KINASE AND PP2C-LIKE DOMAIN-CONTAINING PROTEIN 232 327 - -
Aed8g1216 327 PANTHER PROTEIN KINASE AND PP2C-LIKE DOMAIN-CONTAINING PROTEIN 71 198 - -
Aed8g1216 327 PANTHER PROTEIN KINASE AND PP2C-LIKE DOMAIN-CONTAINING PROTEIN 14 64 - -
Aed8g1216 327 SMART PP2C_4 60 315 IPR001932 -
Aed8g1216 327 Pfam Protein phosphatase 2C 231 310 IPR001932 -
Aed8g1216 327 Pfam Protein phosphatase 2C 75 198 IPR001932 -
Aed8g1216 327 SUPERFAMILY PP2C-like 59 319 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1216 Aed-Chr8 13406345 13409494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1216 1 327 PP2C-type Phosphatase Gene Family AT2G40860 48.826 2.96e-127 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1216 - - gmx:100785390 434.491