Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1178 ATGATGACTATGATTTTTTATTTTGTGGTGTTTTTAATTTCACAGGTGGAAGAGAACATCTGCAAGTTTGCTAAGGGTCTCACTCCTTCTCAGATCGGTGTTATTCTTCATGACTCATGGAATTGCTCAGGTGAGAAGGTCACTGGAAGCAAGATTCTCCATATATTGAAGGCTCATGGGCTTGCACCTGAAATCCCTGAAGATCCGTATCACCTGATCAAGAAGGCTGTCTCTATTAGGAAGCACTTGGAGAGGAACAGGAAGGACAAGGATTCTAAATTAAGGTTGATTTTAGTTGAGAGCAGGATTCACCGCCTTGCTCATTACTATAAGAAGACCACGAAGCCTCCACCTGTGTGGAAATATGAATCAACGACTGCCAGCACTCTTGTGGCTTAG 399 0.4286 MMTMIFYFVVFLISQVEENICKFAKGLTPSQIGVILHDSWNCSGEKVTGSKILHILKAHGLAPEIPEDPYHLIKKAVSIRKHLERNRKDKDSKLRLILVESRIHRLAHYYKKTTKPPPVWKYESTTASTLVA 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1178 132 ProSitePatterns Ribosomal protein S15 signature. 79 109 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aed8g1178 132 PANTHER 40S RIBOSOMAL PROTEIN S13 14 132 - -
Aed8g1178 132 SMART Ribosomal_S15_2 51 130 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aed8g1178 132 CDD Ribosomal_S15p_S13e 51 124 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aed8g1178 132 Gene3D - 18 63 - -
Aed8g1178 132 Pfam Ribosomal protein S15 56 125 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aed8g1178 132 PANTHER RIBOSOMAL PROTEIN S15P/S13E 14 132 IPR023029 -
Aed8g1178 132 SUPERFAMILY S15/NS1 RNA-binding domain 47 123 IPR009068 -
Aed8g1178 132 Gene3D - 64 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1178 Aed-Chr8 12471845 12472960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1178 15 132 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 84.167 7.77e-64 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1178 K02953 - egr:104453961 193.741