Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1156 ATGCAGTCTCGGATTGTTAATTTTGCTTCTGATCGGGAAATCATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAAAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCGAGGACAAATGAGAAACATTCTGAGACTGCTGCAGCATATTTAGAGGCACAACAGATTAAAGCAAAAGAACAACAGCAACTGCAAATGCAGCAGTTGCAATTAATTCGTCAGGCTCAAATGCAAAGGAGGGATTCTAATCATCCTCCCCTTGGAAGTCCTGTAAATGCTATCACAACAGAAGGAGTGCTTGGGCAATCTACTGCCAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTGGATGCTAGAATGGCTCTTTTGAAATCAACCAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACAGCAGCTTTGCAGCAAATCCAGGCTCGAACTCAGCAAACCCCTGATATCAAACCTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGATCCTTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGAATTGCAAATGCAGGATTGAATCAGGGAGTTGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGAATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAAAGTGCAAATCAGTTTCAGCTTTTGCCACAGCAACAACAACAACAACTCCTTGCACAGGTTCAGGCACAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCTAGGGGAAGTTTGAATGCTAAAGACGGTCAATCAATTGCAAATGATGGATCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGGTGCAGAATAACCGGAAAAGGAAGGGGCCTACGTCTTCAGGACCTGCCAACAGTACTGGTACCGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCGACTCATACTCCCGGTGACGGAGTTGCTATGGCTGGTAACTTGCAGAATGTTGCTGGTGTATCCAAAGGTTTGATGATGTATGGTACTGATGGAGTGGGCGGTCTTGCATCTTCGACAAATCAGCTGGATGACATAGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGGACATTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTGGTTCTATACGCAAAAGCAACAGCAAAGTTGTTGTTCTGTGGAACATGGAGACATTGCAAACAGAAAGCACTCCGGAGGAACACAGTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTGCGGCTATGGGATGCTGCAGATCCAACCTTCTTATTAAAGACATATAGTGGTCATACTTCACAGGTGGTGTCCCTTGATTTCCACCCAAAGAAAACTGAACTTTTCTGTTCTTGTGACAATAACAATGAGATTCGTTACTGGAGTATTAGCTTATTCTCTATTCTGAACCATATTAAATTAATCGAGCAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGCTTGGTCACCTTCTGGCTGCAGCAAGTGGCAGTGTTGTGTCTCTCTTTGATGTTGAGACTGAGAGGCAGATACGCACATTACAGGGACACTCTGCAGATGTACACTGTGTCTGTTGGGATGCAAATGGAGATTACTTGGCTTCCGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCTTCTGGGGAGTGCATTCATGAACTTAATTCCAATGGAAACATGTTTCAATCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGCTGAGAATAAATGTATGACAATTCCAGCTCACGAGTGTGTGATATCCGCTCTAGCACAGTCACCAGTGACAGGGATGGTTGCTTCTGCCAGCCATGACAAATCTGTAAAGATTTGGAAGTAA 2346 0.4382 MQSRIVNFASDREIMAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQIKAKEQQQLQMQQLQLIRQAQMQRRDSNHPPLGSPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPDIKPEVNMGAMQRSLPMDPSSIYGQGGMQSKPGIANAGLNQGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLARGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLVQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVSKGLMMYGTDGVGGLASSTNQLDDIEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVGSIRKSNSKVVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFLLKTYSGHTSQVVSLDFHPKKTELFCSCDNNNEIRYWSISLFSILNHIKLIEQGGSTQVRFQPRLGHLLAAASGSVVSLFDVETERQIRTLQGHSADVHCVCWDANGDYLASVSQESVKVWSLASGECIHELNSNGNMFQSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPVTGMVASASHDKSVKIWK 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1156 781 Pfam LisH 24 50 IPR006594 GO:0005515
Aed8g1156 781 Gene3D - 488 690 IPR015943 GO:0005515
Aed8g1156 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 616 IPR001680 GO:0005515
Aed8g1156 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 749 781 IPR001680 GO:0005515
Aed8g1156 781 SMART Lish 22 54 IPR006594 GO:0005515
Aed8g1156 781 MobiDBLite consensus disorder prediction 337 421 - -
Aed8g1156 781 Pfam WD domain, G-beta repeat 748 781 IPR001680 GO:0005515
Aed8g1156 781 Pfam WD domain, G-beta repeat 578 613 IPR001680 GO:0005515
Aed8g1156 781 Pfam WD domain, G-beta repeat 537 570 IPR001680 GO:0005515
Aed8g1156 781 Pfam WD domain, G-beta repeat 662 698 IPR001680 GO:0005515
Aed8g1156 781 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 15 781 - -
Aed8g1156 781 ProSiteProfiles LIS1 homology (LisH) motif profile. 22 54 IPR006594 GO:0005515
Aed8g1156 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 749 781 - -
Aed8g1156 781 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 15 781 IPR044716 GO:0003714
Aed8g1156 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 538 570 - -
Aed8g1156 781 MobiDBLite consensus disorder prediction 334 428 - -
Aed8g1156 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 707 IPR001680 GO:0005515
Aed8g1156 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 538 570 IPR001680 GO:0005515
Aed8g1156 781 Gene3D - 691 781 IPR015943 GO:0005515
Aed8g1156 781 SUPERFAMILY WD40 repeat-like 519 781 IPR036322 GO:0005515
Aed8g1156 781 CDD WD40 519 781 - -
Aed8g1156 781 SMART WD40_4 701 740 IPR001680 GO:0005515
Aed8g1156 781 SMART WD40_4 531 570 IPR001680 GO:0005515
Aed8g1156 781 SMART WD40_4 574 614 IPR001680 GO:0005515
Aed8g1156 781 SMART WD40_4 660 698 IPR001680 GO:0005515
Aed8g1156 781 SMART WD40_4 742 781 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1156 Aed-Chr8 11872267 11884386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1156 576 780 Miscellaneous Gene Families AT5G08390 23.697 6.31e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Aed8g1156 WD40 0.0094 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1156 - - gmx:100797756 1376.3