Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1028 ATGGAAGCAGCAAAGATGATGAGACAAAATCATCAATGGGAGAATTGTAAGAAGCATGTAGGACATATAGTAGGCATTGAGGTCGGTGACAGCTTTAAAAATAGGGTTGAACTCAATGTCATTGGCCTCCATCGGCAGTTTTGGAGTGGTATTGATTATGTTGGAAAGGGTACGAGCTCGTTGGCCACAAGTGTTGTTGTAACTGATCGATACGATAATGCTAGAAAATCTGATGGTACCTTGGTTTACAGTGGTCATGGAGGAAATCCCAATGTGAAGAGTAATGTTTATCCCCAGGATCAAAAGTTGCAAGGGGGAAATTTGGCTCTCAAGAATAGCATGGATACTCGGAGTCCTGTGAGGGTTATACTGAAGGTTTGTAACAAATTAGATGTTGGTGGCAATTGTGATTACTCATTTGTTTATGATGGTTTGTATTTAGTGGACAAGATGACCCAAGAAAGAGGGAAACTTGGAAAACTTGTGTTCAAGTTTACACTAAATAGAATTTTAGAGCAACCCAAAACTTCTCTTGCCTTTAAAGATGATGTTATGGATAACGATGATAGCTCAAGACAACTTGCAAGTTTTAAGGTTAGAAAGAGACACAAGTCTAGAGGAGATAGTGTAGTCCAAAAGGATGTTATTAGAGTCAATGATGTTTCAAAGGGAAAAGAAAAGTTTGCTATTAGGGTGGTGACATCAACAGATTGTGTTCAGATACCCACACCCTTTGATTACATTGTTGAGAACATTTATTTAGAGAAGCTCAAGCAGACAATTCCATGTGGCTGCAATTGTGTAGATGGGTGTGTGAACGGTGACAAATGTGTTTGTTTTGGTAAGAATGGTGGGAGAATGCTGTATGACGGTAAGAAAAGACTTGTTTCTCCTATGGAATCATCGCTTATTTACGAATGTGGTCCTTCTTGCCGGTGCTCCTCTTCTTGCATCAATAGAGTAAGTCAGCATGGTGTCCAGTTCCAACTGGAAATCTTCAAGTCAGAATTGAAAGGTTGGGGTGTTAGAACACGCTCTTTCATTACCTCTGGAAACTTTGTATGTGAGTACATTGGTGAAGTATGTGACAATAGACAAAGTGGATCGAGGCTACATGTTGGCAATGACTATTTGTTTCATATGGGTGTTGGAAAGGGTTTCATCAATGCAACAAAACGTGGAAACATTGGAAGATTTATAAATCATAGCTGTTCTCCAAATCTCCATGTCAAAAATGTTATGTATGATCATAATGATAGGAATCTTCCTCACAAGATGCTGTTTGCTGCAAAGGACATCCCTGCTGGTAGAGAGCTGAGTTTTGATTATAATTCCAAGGGAAAATTCATCAAGGTTAGGATTAACAGCTGCTACTGTGGATCACCTGAATGCAATGAGAAGATCTATATTTAA 1413 0.3914 MEAAKMMRQNHQWENCKKHVGHIVGIEVGDSFKNRVELNVIGLHRQFWSGIDYVGKGTSSLATSVVVTDRYDNARKSDGTLVYSGHGGNPNVKSNVYPQDQKLQGGNLALKNSMDTRSPVRVILKVCNKLDVGGNCDYSFVYDGLYLVDKMTQERGKLGKLVFKFTLNRILEQPKTSLAFKDDVMDNDDSSRQLASFKVRKRHKSRGDSVVQKDVIRVNDVSKGKEKFAIRVVTSTDCVQIPTPFDYIVENIYLEKLKQTIPCGCNCVDGCVNGDKCVCFGKNGGRMLYDGKKRLVSPMESSLIYECGPSCRCSSSCINRVSQHGVQFQLEIFKSELKGWGVRTRSFITSGNFVCEYIGEVCDNRQSGSRLHVGNDYLFHMGVGKGFINATKRGNIGRFINHSCSPNLHVKNVMYDHNDRNLPHKMLFAAKDIPAGRELSFDYNSKGKFIKVRINSCYCGSPECNEKIYI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1028 470 Pfam Pre-SET motif 222 320 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed8g1028 470 ProSiteProfiles SET domain profile. 328 444 IPR001214 GO:0005515
Aed8g1028 470 SMART set_7 328 450 IPR001214 GO:0005515
Aed8g1028 470 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 2 466 - -
Aed8g1028 470 SUPERFAMILY PUA domain-like 3 176 IPR015947 -
Aed8g1028 470 Pfam SAD/SRA domain 19 173 IPR003105 -
Aed8g1028 470 Gene3D SET domain 194 453 IPR046341 -
Aed8g1028 470 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 2 466 - -
Aed8g1028 470 Pfam SET domain 339 444 IPR001214 GO:0005515
Aed8g1028 470 ProSiteProfiles YDG domain profile. 21 169 IPR003105 -
Aed8g1028 470 SMART G9a_1 16 173 IPR003105 -
Aed8g1028 470 SMART preset_2 218 312 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed8g1028 470 Gene3D - 2 188 IPR036987 -
Aed8g1028 470 ProSiteProfiles Pre-SET domain profile. 263 325 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed8g1028 470 SUPERFAMILY SET domain 212 459 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1028 Aed-Chr8 9502022 9503507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1028 2 464 Su(var)3-9 homologs AT1G73100 33.465 9.69e-75 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed8g1028 SAD_SRA 8e-40 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1028 - - gmx:100807574 764.607