Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1027 ATGAAAACCCTAATTTTTTATTATAAAGAGCGTATTTACCTCCTTCCTAACCAAGTGTTGTTGCCTCCATCAAAACAATCCTACGAGCTTCTTAGCAAGACCAAGCTAGTGCAGTGTGTCCCTACGAGGCTCGATAGTGGAAGCAAAGTGGATCGATTGTTGGTGAAAGGTATCAACGACAGACAGTGGGTGCTCAACGGTGGTTGGCATCAACACGAGGACCTTTTGATACCAACCTCACAATTCGAAGATAAAGATAAAAGCTTTAATGGAAGCAGCATGCACAATGAAAAGGGAACATTTGAGAACACTGAAAAACGTGTAGGACATATACAAGGCATTGAGATCGGTGACAACTTTCAATATATAGTTGAACTCAATGTCATTGGCCTCCATCGTCAGTTTTGGAAGGGTATTGACTATGTGGGAGTGGGAAGGAACTCGTTGGCCACGAGCATTGTTGTGACGGAACGTTATGATAATGCTAGGAAATCTAATGATACATTGGTATACATAGGTCATGGAGGAAATCCAAATGTAAGAAATAATATGTCTCTTCAAGATAAAAAATTGAAAGAGGGAAATTTGGCTATGATGAATAGCATGGATTCTAGAACTCCTGTAAGAGTTATCCTGAAGGTTTGCATAAGAAGATTTGATGGTGGACAAAATTCTAGTGACTCTTTTGTCTATGATGGATTGTATCTAGTAGACAAGATGACACGAGAAAGAGGGAAATTTGGAAAGTTCATTTTACTCTTCATAGAATTTCAGAGCAACCTCAGACTTCTGTTGCCATTTAAAGATAGTGTTGTGGATGTGGACAATTCAAGGGCGTCACTTGCAAGTTTTATGCTAAGGAAGAGACACAAATCAAAAGGTCGCGTACAACAAAAGGATGTTGTCCGACTTAACGATGTTTCAAATGGAAAAGAAAAGTTTCCTGTTCGTGTGGTGACATCAACAAATTGTGTTCAAAAGACCCCATCATTTGAGTATATAATCAAAAACATTTATCCGAAGAAGTTAAAGCTGGTAATTCCATCTGGTTGTGATTGTGAAGATAGATGTTTAAACAGTAGTGAGAAGTGTGTTTGCCTGGGTAAGAAAAATGGTGGAATGCCCTATGATTGTAAAAAAAGACCTATTTCGCCTATGGAATCATCAATTGTTTACGAGTGTGGCCCTTCATGCAATTGTTCCCCTTCTTACACCAATAGAGTAAGCCAACATGGTATCCAGTTCCAACTTGAAATCTTCATGACAAAACTGAAAGGTTGGGGTGTTAGAACGCGCTCTTTCATTTCCTTTGGAAGCTTTGTATGTGAGTACATTGGTGAAGTTTGTGACAATAGACAAAGTGGATCGAGGCTAGATGTTGATGATGACTATTTGTTTCATATGGGTGTGGGGAAGGGCTCCATCAATGCAATGAAACGTGGAAACATTGGAAGATTTGTAAATCATAGTTGTTCTCCAAATCTCCATGTTAAAGACGTTTTGTATGATCATAATGCCAAGAATCTTCCTAACAAAATGCTGTTTGTTGCAAAGAACATTCCTCCGGGTAAAGAGCTAGGTTTTGATTATAACTCCAAGGGAAAATTTATCAAGTTAGGAGTAATTGCTGCTACTGTGAATCACAGGAATGCAACGAAAAGATCTACATTTAAAGTGGAACAAAATGATGGGCCAACTGAGGAATTTGGAAGCTTATAA 1719 0.3863 MKTLIFYYKERIYLLPNQVLLPPSKQSYELLSKTKLVQCVPTRLDSGSKVDRLLVKGINDRQWVLNGGWHQHEDLLIPTSQFEDKDKSFNGSSMHNEKGTFENTEKRVGHIQGIEIGDNFQYIVELNVIGLHRQFWKGIDYVGVGRNSLATSIVVTERYDNARKSNDTLVYIGHGGNPNVRNNMSLQDKKLKEGNLAMMNSMDSRTPVRVILKVCIRRFDGGQNSSDSFVYDGLYLVDKMTRERGKFGKFILLFIEFQSNLRLLLPFKDSVVDVDNSRASLASFMLRKRHKSKGRVQQKDVVRLNDVSNGKEKFPVRVVTSTNCVQKTPSFEYIIKNIYPKKLKLVIPSGCDCEDRCLNSSEKCVCLGKKNGGMPYDCKKRPISPMESSIVYECGPSCNCSPSYTNRVSQHGIQFQLEIFMTKLKGWGVRTRSFISFGSFVCEYIGEVCDNRQSGSRLDVDDDYLFHMGVGKGSINAMKRGNIGRFVNHSCSPNLHVKDVLYDHNAKNLPNKMLFVAKNIPPGKELGFDYNSKGKFIKLGVIAATVNHRNATKRSTFKVEQNDGPTEEFGSL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1027 572 SMART preset_2 304 399 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed8g1027 572 Gene3D SET domain 281 538 IPR046341 -
Aed8g1027 572 ProSiteProfiles SET domain profile. 415 531 IPR001214 GO:0005515
Aed8g1027 572 Pfam SAD/SRA domain 108 254 IPR003105 -
Aed8g1027 572 Gene3D - 92 259 IPR036987 -
Aed8g1027 572 ProSiteProfiles Pre-SET domain profile. 349 412 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed8g1027 572 ProSiteProfiles YDG domain profile. 109 259 IPR003105 -
Aed8g1027 572 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 92 534 - -
Aed8g1027 572 SMART set_7 415 537 IPR001214 GO:0005515
Aed8g1027 572 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 92 534 - -
Aed8g1027 572 SUPERFAMILY SET domain 296 532 IPR046341 -
Aed8g1027 572 SMART G9a_1 104 258 IPR003105 -
Aed8g1027 572 Pfam Pre-SET motif 308 407 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed8g1027 572 SUPERFAMILY PUA domain-like 95 254 IPR015947 -
Aed8g1027 572 Pfam SET domain 426 531 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1027 Aed-Chr8 9487389 9490720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1027 91 530 Su(var)3-9 homologs AT1G73100 31.942 4.96e-65 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed8g1027 SAD_SRA 1.9e-33 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1027 - K11420 gmx:100807574 618.616