Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1004 ATGAACAGCACTTCAATTTCTGATTGCAAGGAGAAGAATGGATCATCAAATGCATATTACTCAGTAGGGTTATCTCTAGGGATTCTGCTACTGATCACAGTCATAAGTCTCATTTCCTTTTACTGCAGCCGCAGAAGAAACTCATCACAACAGCAAAACCGCCACAACCAAGTAACAAGTGTCACTGCCAACACCAACACCAACACCATGATGGAGCTTCTTGAATATTCTTCCTTAACAATCCAAATTCTTCATCAACAGCCAAACGGTTATCGAGTTCTGTTGTACTCTGAAGCCAAGCCAACAATAACAACAACAGCTTCTTCTTCTTCTTGCTCAATATGCTTGGAAGATTACAAGGACACGGATTTGGTGAAGCTTTTTCCTGATTGTGGCCACTTGTTTCATAGAAATTGCATTGATAGGTGGCTTCTGGTGAACCTCTCGTGCCCCGTACTTCATTCTAAAATCATGTTGTACATGGCACTCTAG 492 0.4146 MNSTSISDCKEKNGSSNAYYSVGLSLGILLLITVISLISFYCSRRRNSSQQQNRHNQVTSVTANTNTNTMMELLEYSSLTIQILHQQPNGYRVLLYSEAKPTITTTASSSSCSICLEDYKDTDLVKLFPDCGHLFHRNCIDRWLLVNLSCPVLHSKIMLYMAL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1004 163 SMART ring_2 112 153 IPR001841 -
Aed8g1004 163 SUPERFAMILY RING/U-box 111 152 - -
Aed8g1004 163 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Aed8g1004 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 158 IPR013083 -
Aed8g1004 163 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 154 - -
Aed8g1004 163 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 154 IPR045899 -
Aed8g1004 163 Pfam Ring finger domain 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1004 Aed-Chr8 9168244 9169005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1004 20 152 C3H Transcription Factor Family AT5G06490 34.483 8.48e-26 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1004 - - gmx:102670414 121.709