Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0990 ATGGCTCCTACACTTCAACATGCATTGTCTCATTTACTCACAATTGTAGCTTCACTTTCAATACTACTCCTTGTGGTCCCTTCCTCTTGTTTCAATCCCAGAAAGATTGTTAATGCTTCATTTGCTTCAAACGGTTTAGATTGGTCACCAGCTGTGGCAACTTGGTATGGACCTTCCCGTGGGGATGGAAGTGAAGGTGGTGCTTGTGGTTTTGGCAGTGCTGTTGGGAAACCTCCTTTCTCATCATTGATATCTGCAGGAAGCCCTCTTTTGTATGAATCAGGCAATGGCTGTGGTTCTTGTTATGAGGTAAAGTGCACAGGGAATGGTGGATGCTCAGGCAACCCTCTGAGGGTGGTGATAACTGATGAGTGTCCAGGTTGCAGAGATACTCAATATCATTTTGATTTGAGTGGCACTGCTTTTGGTGCCATGGCACTTTCTGGCCAAGATGACAAGCTACGTAATGCTGGCAAAATACCCATTCAATATAGAAGAGTTGCATGCAACTATCCCGGTGTGTACATAGCTTTTCACGTGGACTCTGGATCCAACCAACAATACTTCGCAGTGTTAACTGAATACGAGGATGGGAAAGGTGAACTTGACAATGTTGAACTCAAGCCAGCATTTTCAGCCTCATGGTATTCACTGCAGCGATCATATGGTGCGGTTTGGAAACTCAACAATGGTTCACCACTTAAAGCACCATTCTCCATTAGGTTAACTGCTTCTAGAAAATCTATTGTGGCTAACAATGTGATCCCTGCGGGGTGGAGACCTGGCCAGACTTATAGATCAGTGGTGAATTTTTGA 816 0.4461 MAPTLQHALSHLLTIVASLSILLLVVPSSCFNPRKIVNASFASNGLDWSPAVATWYGPSRGDGSEGGACGFGSAVGKPPFSSLISAGSPLLYESGNGCGSCYEVKCTGNGGCSGNPLRVVITDECPGCRDTQYHFDLSGTAFGAMALSGQDDKLRNAGKIPIQYRRVACNYPGVYIAFHVDSGSNQQYFAVLTEYEDGKGELDNVELKPAFSASWYSLQRSYGAVWKLNNGSPLKAPFSIRLTASRKSIVANNVIPAGWRPGQTYRSVVNF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0990 271 Gene3D - 172 271 IPR036749 -
Aed8g0990 271 Pfam Expansin C-terminal domain 176 256 IPR007117 -
Aed8g0990 271 Gene3D - 34 170 IPR036908 -
Aed8g0990 271 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Aed8g0990 271 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Aed8g0990 271 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Aed8g0990 271 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Aed8g0990 271 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Aed8g0990 271 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
Aed8g0990 271 SUPERFAMILY Barwin-like endoglucanases 47 173 IPR036908 -
Aed8g0990 271 SMART dpbb_1 84 164 IPR007112 -
Aed8g0990 271 SUPERFAMILY PHL pollen allergen 176 267 IPR036749 -
Aed8g0990 271 Pfam Lytic transglycolase 85 164 IPR009009 -
Aed8g0990 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 174 IPR007112 -
Aed8g0990 271 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Aed8g0990 271 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576|GO:0019953
Aed8g0990 271 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Aed8g0990 271 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576|GO:0019953
Aed8g0990 271 PRINTS Major pollen allergen Lol pI signature 194 209 IPR005795 GO:0005576|GO:0019953
Aed8g0990 271 PRINTS Major pollen allergen Lol pI signature 224 241 IPR005795 GO:0005576|GO:0019953
Aed8g0990 271 PANTHER EXPANSIN-B3 14 271 - -
Aed8g0990 271 PANTHER EXPANSIN-B2-RELATED 14 271 - -
Aed8g0990 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 267 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0990 Aed-Chr8 8923535 8926179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0990 28 271 Expansin Gene Family AT1G65680 55.870 1.28e-99 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0990 - - gmx:100778088 457.218