Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0972 ATGGCGGTTTCTTCTTCTTTTTCTGCAACAAAATGGGTCTTCTTCTTGCTTCTGGCGCTGCTGCTCATTCGAGAAGAAACCATGGCTATGGCTACTACCCCACAGATCTCTGACCTCAGGAATGTTGAAGTTGAAAGACACAGGTTCCCGAGCTTGATGAACTCGTCAATGGCGGAGAGGGCTGAGAAATTAAATGAACAAGCTGCAGTGGCTAACCCAGAGGAAGTGGTTTCAATGGTTGAGATGAAGCTGGGATTCTTCTCTTGTGGAACTGGCAACCCCATTGACGATTGCTGGCGCTGTGACCCCAACTGGCAACGCAACAGGAAGCGTCTTGCGGATTGTGGCATTGGTTTTGGCAGAAACTCCATTGGTGGCCGTGATGGCAAGTTCTATGTGGTGACTGACCCCAGAGATGATGACCCTGTGAACCCAAAACCCGGCACGCTTCGCCATGCCGTGATTCAGGACAAGCCCTTGTGGATTGTGTTCAAGAGGGACATGGTGATTCAGCTGAAGCAGGAGCTGATCATGAATAGCTTCAAGACCATTGATGGCAGAGGAGTTAATGTGCACATTGCTAATGGTGCATGCCTCACAATTCAGTTTGTTACCAATGTCATCATCCATGGCTTGCACATTCATGACTGCAAACCCACTGGAAATGCCATGGTGAGAAGCTCCCCAACACACTTTGGGTGGAGGACAATGGCTGATGGAGATGCCATCTCCATATTTGGCTCAAGCCACATTTGGGTTGACCACAACTCATTGTCACACTGTGCTGATGGCCTTGTGGATGCTGTCATGGGCTCAACAGCTATAACTATTTCCAACAACCACTTCACCCACCACAATGAGGTGATTCTGCTGGGCCACAGTGACTCTTACACAAGAGACAAGCAGATGCAAGTGACCATCGCATACAACCATTTTGGAGAGGGACTTATCCAGAGAATGCCACGGTGTAGACATGGATATTTTCACGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGTAGTGCTAACCCCACCATCAACAGCCAGGGCAACCGATACAATGCTCCTGTTAACCCTTTTGCCAAGGAGTGGAAGGGTTGGAATTGGAGGTCAGAGGGAGATTTGTTGCTGAATGGTGCATATTTCACTCCATCAGGTGCTGGAGCCTCAGCCAGCTATGCCAGGGCCTCAAGCTTAGGAGCAAAATCCTCTTCCATGGTTGGTTCCATGACTTCCAATGCTGGTGCACTAGGTTGCAAAAGAGGCAATCAGTGCTAG 1293 0.4911 MAVSSSFSATKWVFFLLLALLLIREETMAMATTPQISDLRNVEVERHRFPSLMNSSMAERAEKLNEQAAVANPEEVVSMVEMKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNSIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACLTIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPVNPFAKEWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCKRGNQC 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0972 430 Gene3D - 92 423 IPR012334 -
Aed8g0972 430 PANTHER PECTATE LYASE 18-RELATED 17 427 IPR045032 GO:0030570
Aed8g0972 430 SUPERFAMILY Pectin lyase-like 83 424 IPR011050 -
Aed8g0972 430 Pfam Pectate lyase 174 356 IPR002022 -
Aed8g0972 430 SMART amb_all 167 364 IPR002022 -
Aed8g0972 430 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Aed8g0972 430 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Aed8g0972 430 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Aed8g0972 430 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Aed8g0972 430 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Aed8g0972 430 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Aed8g0972 430 PANTHER PECTATE LYASE 17 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0972 Aed-Chr8 8482388 8487615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0972 35 430 Polysaccharide Lyase AT4G13710 76.415 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0972 K01728 - gmx:100781845 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0972 8 8482388 8487615 Aed8g0972 8 8482388 8487615 ECH