Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0961 ATGGAAGCACATCCTACTTTCTCCATTGGAAGATCAAAGCAACTGAATAACATAGGGATGTCTGGAGCACTTTCTTCATCCTTGTCGGTCCTTCCAATACCCCCAGAAGAGATGTATCCCAAGCTGCCTGAATCACAGTTGGACTTTCTAGAACAAGAGCTTATGACAAGACCTTTTACCCATTCAAGTTATTTAAATTCCAGTGGAGTAGTTGGGCACATTTTTTCATCCTCCCCTGGATATTCAACTGATCTTCATCACTCATCTCTTTCACTTGAAGAAAAACAGTCTACCGATGCTCATTTTATTTCACAATCATCAACTGACATTGCCCAATTTCCATTATCATATTCTTTAAATACTGGACCACCAACTTCAGCAACACCAATTTACAAAGAAAACAGTATTTCCTGGAATACAGATTCCCTGGCAAGCTTTCCGGATTTTCCTGCAAATGGCTCTATTGATAATAATCGGGTGGAAAGTAGTGCCTGCCCTATCGTTACATCCGAGGAGTATTGTAAGCAAAATGATTGGCAGGAGTGGGCTGAGCGGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGAATGACCTTCTTACTGATGACATTCAAGATCTTGAGCCAAAGGTGCCATTCCAGGTTTCAAAACCATTTTCACAGTTTCCAGGAAATCAATCCCAAGGCCATCAACAGCTTCCTGCTTCATATGGAGATAATTGCACTGGTGCTGCTCTTTCTTCCTCAGCAAATTCTGCTCCTGCCAAGTCACGAATGCGTTGGACACCAGAACTTCATGAGGCGTTTGTGGAGTCCGTCAACCAACTTGGAGGGAGTGAGAAAGCTACTCCAAAGGGTGTGCTAAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGTCATTTGCAGTTTTGGCTTGGAATGAAGAAATACAGGACAGCTAGATATAGACCGGAGTCATCTGAAGGAGTTATGGAGAAAAAAGCAAGTTCCATCGAAGACATGTCATCTCTAAATTTGAAAACTGGTATTGAGATTACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAACCTACAGTTGAGAATAGAAGAACAAGGAAGGTGCCTCCAGATGATGTTTGAGAAGCAATGTAAACCTGGAACTGAAACATTCAAGGCACCATCATCTACCATTGAGACTCCATCTGGAGTGTCTTCAAATGCTATGGAAGCATCACAAGGGGACCATTGCAGGTCAGAACCTGATCAAGTTAACGGCAGTACCACAATTGAGGAAGGCTCGTTGGAAAAGCGTGAGAATCCTGATTCTCCCAAAACTCAACATGCTATTGCTAGTGATCAAGCCCCAAAGCGTCAAAGAACAGAGTAA 1416 0.4209 MEAHPTFSIGRSKQLNNIGMSGALSSSLSVLPIPPEEMYPKLPESQLDFLEQELMTRPFTHSSYLNSSGVVGHIFSSSPGYSTDLHHSSLSLEEKQSTDAHFISQSSTDIAQFPLSYSLNTGPPTSATPIYKENSISWNTDSLASFPDFPANGSIDNNRVESSACPIVTSEEYCKQNDWQEWAERLISDDDTLTSNWNDLLTDDIQDLEPKVPFQVSKPFSQFPGNQSQGHQQLPASYGDNCTGAALSSSANSAPAKSRMRWTPELHEAFVESVNQLGGSEKATPKGVLKLMKVEGLTIYHVKSHLQFWLGMKKYRTARYRPESSEGVMEKKASSIEDMSSLNLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRCLQMMFEKQCKPGTETFKAPSSTIETPSGVSSNAMEASQGDHCRSEPDQVNGSTTIEEGSLEKRENPDSPKTQHAIASDQAPKRQRTE 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0961 471 MobiDBLite consensus disorder prediction 398 440 - -
Aed8g0961 471 Pfam MYB-CC type transfactor, LHEQLE motif 348 394 IPR025756 -
Aed8g0961 471 Coils Coil 351 371 - -
Aed8g0961 471 MobiDBLite consensus disorder prediction 396 471 - -
Aed8g0961 471 Gene3D - 256 321 - -
Aed8g0961 471 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 51 471 - -
Aed8g0961 471 SUPERFAMILY Homeodomain-like 255 309 IPR009057 -
Aed8g0961 471 Pfam Myb-like DNA-binding domain 259 310 IPR001005 -
Aed8g0961 471 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 257 308 IPR006447 GO:0003677
Aed8g0961 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 254 314 IPR017930 -
Aed8g0961 471 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 51 471 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0961 Aed-Chr8 8380721 8387421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0961 53 392 G2-like Transcription Factor Family AT4G28610 50.716 1.92e-91 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed8g0961 Myb_DNA-binding 2.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0961 - - gmx:100793593 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0961 8 8380721 8387421 Aed8g0961 8 8380721 8387421 ECH
Aed8g0961 8 8380721 8387421 Aed4g0137 4 998890 1006347 ECH
Aed4g0137 4 998890 1006347 Aed8g0961 8 8380721 8387421 PCT
Aed2g2593 2 28276303 28280626 Aed8g0961 8 8380721 8387421 PCT