Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0945 ATGAAAGTGGGATTTGAGGTGGTTCATGCAAGTTATACTCCACACATGCATGAAACATGGGATCACTACTCAAATAATGTTACTAATTCCTTCCCATTTTCAGCTCCAATAACCCCATCAAACCCTTCTTATCCAAAGCCAGCTGCAACAGATCAAAATCACTGCCTAAACATGGGGCAGAACAATGAACTCTGTGATAATTGGATGGATGAACACATTAGTGACATCACCAAACACCTTGTTGAAGACTTGCCACAAACAACAACAACTTCTGATCATAACTTGCTTTCTAATACTAATAACCCAACAAGGGTTTCCCACCATCACAACCTTGTTATTCCCTCACTCTCACCCAACTTCAATCTCCACAACATTCAAACAAATGTTCTAGACCACCAAAACCACAATAACAATGTTTACAATTATGATCAAGGGTTGAGCCTAATAACCCTTCTAATGGAGTGTGCAGTGGCAATCTCAGTTGAGAATCTTGGAGAGGCACACATGATGCTACTAGAGCTAACACAACTAACCTCACCCTACAAACCATCATGTGCTGAACGTGTTGTTGCTTACTTCGCCAAAGCCATGACCAGCAGGGTCATGAATTCATGGCTTGGTGTGTGTTCCCCTTTGGTGATTGACCACAAAAGCATCAACTCAGCATTCCAAGCCTTCAACAACATTTCCCCTTTCATCAAATTCGCTCACTTCACTTCAAACCAGGCAATTCTTGAGGCTGTGAGCCATTGTGACAGCATTCACATCATTGATTTGGACATCATGCAAGGCCTTCAATGGCCAGCTTTTTTCCACATACTAGCCACCAGAATGGAGGGCACACCACAGGTCACAATGACGGGTTTGGGAGCCTCAATGGAACTCCTCTTCCACCCCATTGCAACCAAGTTTGGAGAAGTAATTGATGTGTCAATGCTGCATGTGAAGCCTGGTGAGGCAGTGGCAGTGCACTGGCTGCAGCACTCACTCTATGATGCAACTGGCCCTGATTGGAAAACCCTGAGGCTCCTTGAGGAGTTGGAGCCAAGAATCATCACCTTGGTGGAGCAAGATGTGAACCATGGTGGAGGAGGTTCTTTCTTGGACCGTTTTGTTGCATCCTTGCACTACTACTCCACCCTCTTTGATTCCCTTGGAGCTTACTTGCACAATGATGATGCCAACAGGCACAGTGTGGAGCATGGCCTTCTCTCCAGAGAGATCAACAATGTGTTGGCCATAGGGGGCCCTAAGAGGAGTGGTGAAGACAGGTTTAGACAGTGGAGGAGTGAGCTTCTTGCTAGGAACTGTTGTTTTGTGCAGGTTCCTATGAGTGCCAATTCTATGGCTCAAGCACAGCTGATATTGAACATGTTTTCACCTGCTTTTGGTTATAGCCTTGCTCAAGTTGAGGGGACTTTGAGGCTTGGATGGAAGGATACAAGCTTGTACACTGCTTCTGCATGGACCTGCTGCAGTAACTCTAGCTAG 1491 0.4554 MKVGFEVVHASYTPHMHETWDHYSNNVTNSFPFSAPITPSNPSYPKPAATDQNHCLNMGQNNELCDNWMDEHISDITKHLVEDLPQTTTTSDHNLLSNTNNPTRVSHHHNLVIPSLSPNFNLHNIQTNVLDHQNHNNNVYNYDQGLSLITLLMECAVAISVENLGEAHMMLLELTQLTSPYKPSCAERVVAYFAKAMTSRVMNSWLGVCSPLVIDHKSINSAFQAFNNISPFIKFAHFTSNQAILEAVSHCDSIHIIDLDIMQGLQWPAFFHILATRMEGTPQVTMTGLGASMELLFHPIATKFGEVIDVSMLHVKPGEAVAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGGGSFLDRFVASLHYYSTLFDSLGAYLHNDDANRHSVEHGLLSREINNVLAIGGPKRSGEDRFRQWRSELLARNCCFVQVPMSANSMAQAQLILNMFSPAFGYSLAQVEGTLRLGWKDTSLYTASAWTCCSNSS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0945 496 PANTHER OS05G0485400 PROTEIN 82 491 - -
Aed8g0945 496 Pfam GRAS domain family 148 291 IPR005202 -
Aed8g0945 496 Pfam GRAS domain family 294 490 IPR005202 -
Aed8g0945 496 ProSiteProfiles GRAS family profile. 139 490 IPR005202 -
Aed8g0945 496 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 82 491 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0945 Aed-Chr8 8230629 8232718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0945 143 490 GRAS Transcription Factor Family AT3G54220 52.547 5.83e-120 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed8g0945 GRAS 8.3e-48 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0945 - - gmx:100785242 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0945 8 8230629 8232718 Aed8g0945 8 8230629 8232718 ECH