Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0942 ATGGAGGAAGAGGAGGATCGAATTTTGCTCTCTAGTTTGGGCGTTAAGTCTGCCAATCCCGAAGACATCGAACGCGACGTTTTGGAAAAGGCTACTAGGAATAATGATTCAGTGACCGTTACTGAGGCCGAAGGTGGCGCCAAGGAAGAACGTTCTGATTTACCTGAAGATGTTGATCCATCAGCGAATGCAAAAGCTGAACTTCATCAGAGGTTGAGAGCTGTTCAATTTGAAATAGACGCCGTTGCCTCTACTGTTGAAAATAATGAAGAATGTAGTGATGCTGGTGAGGAGCGAGGGACTGCTGAGGATGATTCCAATGACAATTTGAACCTTCAGTGTGCTCTTGCGGCCGATAGGCTGAGGAGCCTGAAGAAGACGAAAGCTCAACTAGAGAGAGAGCTTTTGGATTTGTCTGTGGATGATCCTTTGAAAAGCGTTGAGCATGGAGAATTGATCCTTAGTTTAGTTAGGGAAGAACGGAAATCAAAGAGGAAGGTTAAAGACGATAAGAAATTGAACAAAGGCACAGGGAAGCGGTGCAAGAAAGTCTCATTTGATGATGATGTTGATTTTGACGCTGTTCTGGATGCAGCCTCTGCAGGCTTTGTTGAAACAGAAAGGGATGAACTGGTGAGAAAAGGAATTTTAACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGCCGCATTCAACAACCTGAAACATCAACTAGTCATAATGCAGCTGAGGAAGAAAATATTGGTGACCTTGCCTCTGCAAGTGTTGAAAGAGCTGCCCGATCCATGTCTGAGGCAGCAAGATCTCGCCCAACCACCAAGCTGCTTGAGCTTGAAGCTGCACCGAAGCTTGATGCTCCCACTTTTCCTTTTCGCAGGCTCAAGAAACCACTACAATCTTCCAAACCTCTAGAGAGAGACGTGGAGATTGACAAAGATTCAAAATGGAAAAAGAGGCGGCCTCTGCCTGGTAGGAAATGGACCAAGCGTGTTTCTTCCGAGGATACACATCTGGAAGAAAGTGAAAATGCAAATGATTGCTTGGATACTTCTAGTTGTGAAAATTTAGAAGAACAAGATGTTGAACTTGAGGATCATGAATCTTCTTATGTAACATTAGAAGGTGGGTTGAAAATCCCCGATAATATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAGTGGATGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGCGATGAGATGGGACTTGGTAAAACTGTTCAGGTCTTATCATTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAACCCAGCATTATTATCTGTCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCTAAATTCCATGTAGAGCTTTTACATGATTCTGCTCCAAGAAAGAAGCAAGCTAAATCTGAAGAAACAGACTATGAAAGCAATATTTCAAGTGACAGTGATTATGAGAAAAGTGTGCCATCTAAAAATACAAGAAATACAAGAAAATGGGAATCCCTGATAAATCGTGTCATGAGATCGGAATCTGGATTACTCATCACCACTTATGAGCAGCTCAGAATATTGGGGGACCAGTTGCTTGACATTCAATGGGGTTATGCAGTTCTTGATGAAGGGCATAGAATAAGGAATCCAAATGCTGAAGTTACCCTAGTTTGCAAACAGCTACAGACTATACACCGCATCATAATGACTGGTGCACCTATTCAGAACAAACTGTCAGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTGCTGTTCCTATATCAGTTGGTGGATATGCAAATGCTTCACCGTTACAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACACCAGAACAAGTAGCTTCATATAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTACGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGATCTACTAGAAAGGGATCATGCCTCCAGTAATCCAGATTATGGAAATCTAGAACGTAGTGGGAAAATGAAAGTTGTAGGTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTCCTTTTTACACAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTGACTACTTCTGGTCACATTTATCGGAGAATGGATGGTCTCACACCTGTAAAACAGAGAATGGCTTTAATAGATGAATTTAATGAATCGAGTGAAATATTTATTTTCATTTTAACAACCAAAGTTGGGGGTTTGGGGACAAATCTTACGGGTGCAAATAGGGTGATCATCTTTGACCCTGACTGGAATCCCTCAACTGATATGCAGGCCAGAGAGCGTGCTTGGCGTATTGGTCAGAAGCGGGATGTAACAGTGTATAGGTTGATCACACGTGGGACTATAGAGGAGAAAGTGTACCACCGTCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCATACTTAATGTGGATGGAGAAACTGGGTCAACTGAAACGTCAAATATTTTCAGTCAAATATCTGAAGAAGTCAACATCATTGGGGCACATAAAGAAAATAAGGATAGCCAAACGGCTGAACTGGATTCTGAAGATGTTGCAGTTGGTAATGATGACAAATCAGAGAGAGGAACTTTAAGGGGAAAGGGGAAAGAGAAGGTTGAACATAGTAATGGGGTTGATGAAGAAACAAATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCAATGATGAGGAGAAGATGAGACTTGAGGAGCAAGCGTCCCGGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATGCTCCGAAGCCATGTTAGCATATCTGTTCCAACATGGACAGGAAGGTCAGGAACTGCCGGTGCACCGTCATCTGTCAAGCGGAAGTTTGGATCAACTGTGAATCCCCGGTTGGTAAATAATAGCAAAGCATCTGATGAATTTCCTAGCAAGGGAACTAACAAGATCAATGGATTTGCTGCCGGGGCATCTGCTGGTAAAGCATTATCTTCCGCTGAACTATTGGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCTGGGCTTGAACAACATCAGTTTGGTGTGTCCTCAAGTTCCACTAATCAAGCAAGATCTGTAGAAGTTAGATCTTCTAGGGTTACTGAAAATTCATCTGTACAACCTGAAGTATTGATTCGGCAAATCTGTACTTTTGTACAACAGCGAGGTGGCAGTTCTGATTCAGCCAGCATAGTTCAGTATTTCAAGGACCGTATTCCCTCAAAAGATCTTCCCCTGTTCAAGAATATGTTGAAGGAAATTGCGACTCTGCATAAAGGATCGAATGGATCCTATTGGGTTCTGAAACCAGAATATCAATTCTGA 3639 0.4207 MEEEEDRILLSSLGVKSANPEDIERDVLEKATRNNDSVTVTEAEGGAKEERSDLPEDVDPSANAKAELHQRLRAVQFEIDAVASTVENNEECSDAGEERGTAEDDSNDNLNLQCALAADRLRSLKKTKAQLERELLDLSVDDPLKSVEHGELILSLVREERKSKRKVKDDKKLNKGTGKRCKKVSFDDDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRIQQPETSTSHNAAEEENIGDLASASVERAARSMSEAARSRPTTKLLELEAAPKLDAPTFPFRRLKKPLQSSKPLERDVEIDKDSKWKKRRPLPGRKWTKRVSSEDTHLEESENANDCLDTSSCENLEEQDVELEDHESSYVTLEGGLKIPDNIFEALFDYQKVGVQWMWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIICPVTLLRQWKREAKKWYPKFHVELLHDSAPRKKQAKSEETDYESNISSDSDYEKSVPSKNTRNTRKWESLINRVMRSESGLLITTYEQLRILGDQLLDIQWGYAVLDEGHRIRNPNAEVTLVCKQLQTIHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVASYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHASSNPDYGNLERSGKMKVVGQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTTSGHIYRRMDGLTPVKQRMALIDEFNESSEIFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFILNVDGETGSTETSNIFSQISEEVNIIGAHKENKDSQTAELDSEDVAVGNDDKSERGTLRGKGKEKVEHSNGVDEETNILKSLFDANGIHSAMNHDLIMNANDEEKMRLEEQASRVAQRAAEALRQSRMLRSHVSISVPTWTGRSGTAGAPSSVKRKFGSTVNPRLVNNSKASDEFPSKGTNKINGFAAGASAGKALSSAELLAQIRGNQEKAIGAGLEQHQFGVSSSSTNQARSVEVRSSRVTENSSVQPEVLIRQICTFVQQRGGSSDSASIVQYFKDRIPSKDLPLFKNMLKEIATLHKGSNGSYWVLKPEYQF 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0942 1212 CDD DEXHc_ERCC6 386 595 - -
Aed8g0942 1212 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 398 596 IPR014001 -
Aed8g0942 1212 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 246 1109 - -
Aed8g0942 1212 MobiDBLite consensus disorder prediction 87 107 - -
Aed8g0942 1212 Gene3D - 652 947 IPR027417 -
Aed8g0942 1212 SMART ultradead3 382 613 IPR014001 -
Aed8g0942 1212 Gene3D - 353 645 IPR038718 -
Aed8g0942 1212 CDD SF2_C_SNF 728 853 - -
Aed8g0942 1212 Pfam Helicase conserved C-terminal domain 740 842 IPR001650 -
Aed8g0942 1212 MobiDBLite consensus disorder prediction 1 65 - -
Aed8g0942 1212 Coils Coil 994 1021 - -
Aed8g0942 1212 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 733 892 IPR001650 -
Aed8g0942 1212 MobiDBLite consensus disorder prediction 473 499 - -
Aed8g0942 1212 Pfam SNF2-related domain 389 710 IPR000330 GO:0005524|GO:0140658
Aed8g0942 1212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 646 IPR027417 -
Aed8g0942 1212 MobiDBLite consensus disorder prediction 322 347 - -
Aed8g0942 1212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 648 907 IPR027417 -
Aed8g0942 1212 Coils Coil 107 141 - -
Aed8g0942 1212 MobiDBLite consensus disorder prediction 326 343 - -
Aed8g0942 1212 MobiDBLite consensus disorder prediction 926 968 - -
Aed8g0942 1212 SMART helicmild6 759 842 IPR001650 -
Aed8g0942 1212 MobiDBLite consensus disorder prediction 43 65 - -
Aed8g0942 1212 PANTHER SNF2/RAD54 FAMILY MEMBER 246 1109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0942 Aed-Chr8 8203227 8210689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0942 734 896 RAD5 or RAD16-like Gene Family AT1G11100 35.542 2.11e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed8g0942 SNF2_N 1.2e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0942 K10841 - gmx:100820025 2096.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0942 8 8203227 8210689 Aed8g0942 8 8203227 8210689 ECH