Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0936 ATGGGTCTTAGAGACATTGGTGCTTCACTTCCCCCAGGGTTTCGGTTTTACCCCAGTGATGAGGAATTGGTCCTTCATTACCTTTACAAAAAGATCACTAATGAAGATGTTCTGAAGGGTACTTTGATGGAAATTGACTTGCACACGTGCGAGCCATGGCAACTCCCAGGGCATAGATTAGTAGTGGGACAGGTGCAAGTTTCCCACGAGGACTGGGTGCTGTGTAGAGTGTTCCACAAAGGAAAAACCGCAGCAGACAACAACAACAACAACTTCAACAGTGCCAAACTCATGATGTACGAGAAGAGCACAGTTCCATCCCTAACTTTGGCTTCGTCATCTCCAACTAATTACCAAAGTAGTACCACATCGGTTGGGTATAACAACCAACTTGCCACCACCACTTTCTCATCCTCAATGCCAATTGCAACCCATCATCACAATTATTATAATCATCATATTCCAAACCAAAGCCAAAACACCAATAACTCTAGCACCGTTACTACTCAAAACATTAGTCCCAAATGTGATGATGCTAGTGGTGGATATGGGTTCTTATGGGACATGGACCTCGAAGAAAATAGCTTCGATGGAATCAGATTCGAGGTTCATAACGTACAATAA 624 0.4343 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEDVLKGTLMEIDLHTCEPWQLPGHRLVVGQVQVSHEDWVLCRVFHKGKTAADNNNNNFNSAKLMMYEKSTVPSLTLASSSPTNYQSSTTSVGYNNQLATTTFSSSMPIATHHHNYYNHHIPNQSQNTNNSSTVTTQNISPKCDDASGGYGFLWDMDLEENSFDGIRFEVHNVQ 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0936 207 MobiDBLite consensus disorder prediction 153 173 - -
Aed8g0936 207 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 57 - -
Aed8g0936 207 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 57 - -
Aed8g0936 207 ProSiteProfiles NAC domain profile. 10 175 IPR003441 GO:0003677|GO:0006355
Aed8g0936 207 Pfam No apical meristem (NAM) protein 11 75 IPR003441 GO:0003677|GO:0006355
Aed8g0936 207 Gene3D NAC domain 19 68 IPR036093 GO:0003677|GO:0006355
Aed8g0936 207 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 67 198 - -
Aed8g0936 207 SUPERFAMILY NAC domain 8 79 IPR036093 GO:0003677|GO:0006355
Aed8g0936 207 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 67 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0936 Aed-Chr8 8108611 8114278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0936 1 85 NAC Transcription Factor Family AT4G28530 37.857 6.05e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed8g0936 NAM 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0936 - - gmx:100783645 132.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0936 8 8108611 8114278 Aed8g0936 8 8108611 8114278 ECH
Aed4g0161 4 1174770 1180474 Aed8g0936 8 8108611 8114278 PCT