Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0934 ATGAACCAGCAATGTGGGCAATACCTCCTCCTCCACCATTTGTCTTCATCGGGCAAGGTTAATTGCAACTGCTTAACTGTTTTGTTGGGATCATTCTGTTTTCAGGTTCTACACGGTGGGACATTGTTGATCAAGTTACAGAGCACTTCACTAGATATCTGTCACATGATAGTTAGATCCTTACAGTCACCTCCATCTGCATCGGTTTTGGCTAATCTCCAGAACTATATCCAGGAACTTCAGTGTCTGAAGAAGGAAATGGCAGTGGTCTACATAGAAGAAGCACTAAGAAACCAAAGAGATAATATTGAACTCTGCAAGGAGCATCTCAAGGAAGTTATCGAGTTACTGAAATTGACCTCAAATCAGGATCTCTTGAGAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCTGAAGTCAGTAAAATGATAGGGGACATGGAAGAACTTAATGAAGTTGTGATTCTTGTCCGTAGTTTGCGTGATTATGTGATGAAAACCAAGTGTCCTGTAGTCAAGAGTGGTCTCTCAATCCCTCCATACTTCCGCTGTCCTTTATCACTGGAACTCATGTTGGATCCTGTCATCGTGGCTTCGGGTCAAACATACGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCCAAAACTCGGCAGAGACTTACTCATACAAATCTCATTCCCAATTATACTGTCAAAGCCATGATAGCAACTTGGTGTGAGGAAAATAATGTCACACTTTCTGGTAACTCTGAGAACAATAAACCAGCCTGTGTCACGTCCCCCTCGGACCATTTATTGCCTCAAGATTGTTGTGTTGAGTCTTTGCCTAGTAGCAATTCCATTTCAAGACCGTCTCTTCAAACTGAAAATGCATTTGAAGAGCAAAAGGGTGATAATAATGATAACTCTTTCAGATTATGCAGAGAATTCAATGGATGCCAGAGTGGAGCAACTGAAAAGTGTGAGCAACAGTCCCCATATACTCACAGCAGAGGTGAATCGTTTTCAAGTTCGATTTCAAGCACTGATTGTGCACATGCGGTTTCAAAAGAGGTGTCAGGGATATCCAAAAATAAGCCTCAAAATGTGAAGGTGCTGTCTGGAGAAATCACAAAGGTGTGTCCTCCTTCTCCTGTTAACAAACAATCAGGGATATCTCCTCGACCATCTGGAATGCAAATTCAAAACCCTGGATCAGATGTGGGAGTGTTGGAGAATGGAAACAATAACAATAACAATAGTAATAATAATAATAATAATAGTCATTCTAGATTTGATTCCGACTCTTTTAACTCTGGGTCGGATGAATTGACCACGTCATTTCATGTCATTAGATTGATTGAAGACCTTCACAGCCAATCAGTTGAAATGCAGACTACCGCCGCTGAAGAATTGAGGCTCCTTACAAAGCATAACAAGGAAAACCGTGGCATTGTAGGGCAGTGTGGGGCCGTCATGCCTTTGCTTTCACTGCTGTATTCAGACATGCAGGTAACACAAGAGCATGCTGTTACGGCTCTGCTGAATTTATCAATTAACGAAGACAACAAGGCCTTGATCATGGAAGCAGGAGCCATAGAACCGCTTATCCATGTTTTGAGGACAGGAAATGATAGTGCCAAGGAGAATTCCGCGGCAACTATTTTCAGCCTCTCGATAGTTGAGAACAACAAGGCAAGAATTGGCCGTTCTGGAGCAGTTAAAGCTTTGGTGGATCTTCTTGCCTCAGGAACTCTTAGAGGAAAGAAGGATGCTGCTACAGCTCTATTTAACCTGTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCGGTGAAGATTCTGGTTCGGTTAATGGACCATGCCGAAGGAATGGTTGACAAGGCCGTTGCTCTTCTGTCAAACCTGTCAACAATTCCAGAGGGCCGGTTAGAAATTGCAAGGGAAGAGGGCATCCCCTTAGTAGTTGAAATTGTTGAGTATGGTTCACAGAGGGGAAAGGAAAATGCAGCCTCCATTCTCTTGCAATTATGCCTTCATAGTCCTAAGTTCTGTAACGTGGTTTTGCAAGAAGGTGCCGCCCCTCCCCTAGTTGCGTTGTCAATATCCGGTACACCAAGAGCGAAGGAAAAGGCACAACAGCTTCTCAGCCATTTTCGTAATCAGCGGGAAGCAGCGGCTACTGGGAAGGGGAAATCATGA 2211 0.4333 MNQQCGQYLLLHHLSSSGKVNCNCLTVLLGSFCFQVLHGGTLLIKLQSTSLDICHMIVRSLQSPPSASVLANLQNYIQELQCLKKEMAVVYIEEALRNQRDNIELCKEHLKEVIELLKLTSNQDLLRESIAVEKERLNAEVSKMIGDMEELNEVVILVRSLRDYVMKTKCPVVKSGLSIPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLIPNYTVKAMIATWCEENNVTLSGNSENNKPACVTSPSDHLLPQDCCVESLPSSNSISRPSLQTENAFEEQKGDNNDNSFRLCREFNGCQSGATEKCEQQSPYTHSRGESFSSSISSTDCAHAVSKEVSGISKNKPQNVKVLSGEITKVCPPSPVNKQSGISPRPSGMQIQNPGSDVGVLENGNNNNNNSNNNNNNSHSRFDSDSFNSGSDELTTSFHVIRLIEDLHSQSVEMQTTAAEELRLLTKHNKENRGIVGQCGAVMPLLSLLYSDMQVTQEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLRTGNDSAKENSAATIFSLSIVENNKARIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKILVRLMDHAEGMVDKAVALLSNLSTIPEGRLEIAREEGIPLVVEIVEYGSQRGKENAASILLQLCLHSPKFCNVVLQEGAAPPLVALSISGTPRAKEKAQQLLSHFRNQREAAATGKGKS 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0934 736 Gene3D - 426 587 IPR011989 -
Aed8g0934 736 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 490 532 IPR000225 GO:0005515
Aed8g0934 736 SMART arm_5 479 519 IPR000225 GO:0005515
Aed8g0934 736 SMART arm_5 643 682 IPR000225 GO:0005515
Aed8g0934 736 SMART arm_5 520 560 IPR000225 GO:0005515
Aed8g0934 736 SMART arm_5 602 641 IPR000225 GO:0005515
Aed8g0934 736 SMART arm_5 561 601 IPR000225 GO:0005515
Aed8g0934 736 SMART Ubox_2 182 245 IPR003613 GO:0004842|GO:0016567
Aed8g0934 736 Coils Coil 134 154 - -
Aed8g0934 736 CDD RING-Ubox_PUB 183 225 IPR045210 -
Aed8g0934 736 ProSiteProfiles U-box domain profile. 178 252 IPR003613 GO:0004842|GO:0016567
Aed8g0934 736 MobiDBLite consensus disorder prediction 285 305 - -
Aed8g0934 736 Pfam U-box domain 179 250 IPR003613 GO:0004842|GO:0016567
Aed8g0934 736 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 572 614 IPR000225 GO:0005515
Aed8g0934 736 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 34 730 - -
Aed8g0934 736 Gene3D - 588 733 IPR011989 -
Aed8g0934 736 MobiDBLite consensus disorder prediction 383 438 - -
Aed8g0934 736 SUPERFAMILY RING/U-box 178 252 - -
Aed8g0934 736 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 613 654 IPR000225 GO:0005515
Aed8g0934 736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 253 IPR013083 -
Aed8g0934 736 MobiDBLite consensus disorder prediction 285 300 - -
Aed8g0934 736 Coils Coil 66 93 - -
Aed8g0934 736 PANTHER U BOX DOMAIN-CONTAINING 34 730 - -
Aed8g0934 736 SUPERFAMILY ARM repeat 452 722 IPR016024 -
Aed8g0934 736 MobiDBLite consensus disorder prediction 375 438 - -
Aed8g0934 736 Pfam Armadillo/beta-catenin-like repeat 479 518 IPR000225 GO:0005515
Aed8g0934 736 Pfam Armadillo/beta-catenin-like repeat 564 600 IPR000225 GO:0005515
Aed8g0934 736 Pfam Armadillo/beta-catenin-like repeat 520 559 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0934 Aed-Chr8 8072119 8075909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0934 25 736 U-box Gene Family AT3G54790 52.348 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0934 - - gmx:100800949 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0934 8 8072119 8075909 Aed8g0934 8 8072119 8075909 ECH