Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0918 ATGTCTTCCTCTTTCTTTCAGAACCCAGCAAATTATTGGGACATGTTGCAGCAGCAGCAGGATCCTTCAGAAGTTTTGTTCGAATCATCATCGTCATTCTCAAGCAATAATAATGCTGTTCTTGACCCTCTTCACGATTCTCTTTCCTTCGACATGGTTGACTTCTCCACAACACAAGGAAACAACAACAACGTGGAACCACAACAGCATCATAGGGAAATTAGGTCATACATCGGAGTGAGGAAAAGGCCATGGGGGAAATTCGCTGCAGAGATCAGAGACACGACGAGGAACGGTGCAAGGGTTTGGCTTGGAACCTTTGACAGTGCTGAGGCTGCTGCTTTGGCTTATGACCAAGCTGCATTCACCATGAGAGGTGACAATGCGGTCCTCAATTTTGCAGTGAAAACGGTGAAGGAATCTTTGCAAGAGATTCAATATAGCTGCTGCAGTGGCTCCTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAGTTGTCATCAAAAAGTAAAAAGTGTAAGGGAAAAGAGACAACATCGTCAAAGGATCCAAATCCAACACAAAATAATGTAGTGGTGTTTGAGGATTTGGGTGTTGACTATCTAGAGCAACTTCTAAGTATGTCAGATCAAAGTGCAAGTGGAAGCCCTAGCTACTACTTCAACTAA 678 0.4425 MSSSFFQNPANYWDMLQQQQDPSEVLFESSSSFSSNNNAVLDPLHDSLSFDMVDFSTTQGNNNNVEPQQHHREIRSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFDSAEAAALAYDQAAFTMRGDNAVLNFAVKTVKESLQEIQYSCCSGSSPALALKERHCIQRKLSSKSKKCKGKETTSSKDPNPTQNNVVVFEDLGVDYLEQLLSMSDQSASGSPSYYFN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0918 225 PANTHER DNA-BINDING DOMAIN 57 211 IPR044808 GO:0003700|GO:0009873
Aed8g0918 225 Pfam AP2 domain 77 126 IPR001471 GO:0003700|GO:0006355
Aed8g0918 225 SUPERFAMILY DNA-binding domain 77 135 IPR016177 GO:0003677
Aed8g0918 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 57 211 - -
Aed8g0918 225 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Aed8g0918 225 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Aed8g0918 225 CDD AP2 77 135 IPR001471 GO:0003700|GO:0006355
Aed8g0918 225 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Aed8g0918 225 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Aed8g0918 225 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0918 Aed-Chr8 7901350 7902027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0918 75 217 AP2-EREBP Transcription Factor Family AT3G23240 58.042 6.06e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed8g0918 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0918 K14516 - gmx:100811486 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0180 4 1318044 1318610 Aed8g0918 8 7901350 7902027 PCT