Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0913 ATGGCAATGAGCAAGAGCCACTCCTACAACAACAACAACAACAACAAGCTTGGTTATGAAGTTCTCCCACCCATCAAAACACAGGATGGAACAACACTCCAACACCCACCACAATCAGACTATGCTTTTCCCATACTTGTCATTGTTGTTCTAAGCATCTTAGCCACTGTTCTGTTGCTCCTAAGCTACTTCACCATTCTAACCAAATACTGCTCAAACTGGCGTCAAGTTAACCCAATGAGATGGATTTCCCTCCTCCGAGCTCGGCACGGCGGCGAGGACCCCTTCATAGCATTCTCACCTGCCATGTGGAACCGAGGGCTTGATGAGTCCATCATCAGAGAAATCCCAACTTTTCAGTTCATAAAAGGAGGAGAAGAAGGTGGTGGTGAGGACCAACAAAGTGTGTATGGTTGTGTGGTGTGTTTGGCTGAGTTCAAGGAACATGATGTGCTAAAAGTACTTCCCAATTGCAACCATGCTTTTCATTTGGACTGCATTGACATTTGGCTTCAGAGCAATTCCAATTGCCCACTTTGTAGATCAAGCATTTCAGGCAGCAACACACACTCTCTATTGGACCACATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTTCACAGTTGCTCTCAAACATGGGTAGTGATGAAGATTTTGTGTGCCACCACCATATGGGAGATGAGTGTATTGATATCAGAAAGAAAGATGAACAATTTCTTATTCAGCCTATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAAACTTACTTGGATGCTCAAGTCATTATACAACAAAACAGGCATCAGAATGAAGCTAGTGCTAGTGAGGATTGTAACAGTCGATGTAGAAGAGCATTCTTCCCATTTTGCTATGGAAAGGGGTCCAAAAATGCAGTTCTTCCTTTGGAGAATGATGCTTAA 930 0.4323 MAMSKSHSYNNNNNNKLGYEVLPPIKTQDGTTLQHPPQSDYAFPILVIVVLSILATVLLLLSYFTILTKYCSNWRQVNPMRWISLLRARHGGEDPFIAFSPAMWNRGLDESIIREIPTFQFIKGGEEGGGEDQQSVYGCVVCLAEFKEHDVLKVLPNCNHAFHLDCIDIWLQSNSNCPLCRSSISGSNTHSLLDHIIAPSSSPQDSSQLLSNMGSDEDFVCHHHMGDECIDIRKKDEQFLIQPIRRSFSMDSAHDRQTYLDAQVIIQQNRHQNEASASEDCNSRCRRAFFPFCYGKGSKNAVLPLENDA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0913 309 SUPERFAMILY RING/U-box 138 185 - -
Aed8g0913 309 PANTHER RING-H2 FINGER PROTEIN ATL16 11 220 IPR044600 GO:0016567|GO:0016740
Aed8g0913 309 PANTHER RING-H2 FINGER PROTEIN ATL16 223 306 IPR044600 GO:0016567|GO:0016740
Aed8g0913 309 SMART ring_2 139 180 IPR001841 -
Aed8g0913 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 186 IPR013083 -
Aed8g0913 309 Pfam Ring finger domain 139 181 IPR001841 -
Aed8g0913 309 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 220 - -
Aed8g0913 309 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Aed8g0913 309 CDD RING-H2_PA-TM-RING 139 181 - -
Aed8g0913 309 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 223 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0913 Aed-Chr8 7867258 7868504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0913 43 220 C3H Transcription Factor Family AT1G04360 47.594 1.35e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0913 K19041 - gmx:100809883 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0913 8 7867258 7868504 Aed8g0913 8 7867258 7868504 ECH
Aed8g0913 8 7867258 7868504 Aed4g0183 4 1331854 1332675 PCT