Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0908 ATGTCTTGTTGCCAAGGGAGCATCTTCAAGGAGAAGAAATTGGGAGTGAGTATCATGGCTACTAAGTTTACAAGAAGGACTGAGAGAACTGAGAGCATTGGTGGAATAACATGTGCCTATTGGAGGGCTGGGAGATGCAACCGAAATCCTTGCAGGTTTTTGCACGCAGAAACACCGTCACCACGTACTGCATGTGGTAGTGCCAATTCTGCTCATGGACATAGAAAAAAGCCTTATTCTGCCCCTAAGAATATCCCTAAATATAATTCAAAGCCAAAGACAGCATTGATCAGAAGTAATGAAGATAGAGGAGATGCAACAAAGGTTGCTGAGGCCTCCAAGAAATCATCATCAAGAATAATATGTAAATATTGGACCAACAATAATTGTGTACATGGTGAAAAATGTCGGAATTTACATTCATGGTCTTGTGGTGATGGGCTTTCCACCGTAAAAACCCTTCATGAACACAAGAAGGTTATCACTGGCATTGCGCTGCCTTCTGGATCCGACAAACTTTATTCCGGTAGCACTGATGGGACAGTTCGGATATGGGACTGCCATACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAATGAGGGGCCATGGATATTTGTTGGTCTACAAAATGCTGTCAAGGCTTGGAATATTGAAACAATTTCAGAGTTTACTCTTGATGGACCCAAAGGTCCAGTCCGTGCCATGACGGTTGGCAATGATACACTCTTTGCTGGTGGAGAGGATGGTGTTATTTCTGCCTGGAGAGGAAGCTCTGAAGCTAAGTCTCCTTTTGAACTGGTTGCATCACTCACTGGCCATACTAAAGCAGTGGTTTCACTTACTGTTGGACGCAAGATGCTATACTCCGGGTCCATGGACAAAAGCATAAAGGTCTGGGACATGGATACATTAGAGTGTACAATGACACTAAATGAGCACACTGATGTAGTCACTTCCCTTATTTGTTGGGACCAATATTTGTTGTCAAGTTCATCTGACTGCACAATTAAGGTCTGGGCTTGTACCGAAGTGGGAACTTTGAAAGTGATATATACACACACGGAAGAAAATGGTGTTGTTTCACTTTCTGGAATGCCTGATGCAGAAGGAAAACATATATTGTTTGCCTCTTGTAGAGACAATTCAGTTCGCTTGTATGAAATGCCATCATTTTCTGAGAGGGGTCGTTTATTTGCAAAGAAAGATGTTGCATCAATTGAGGTAGGTCCTGATGGCCTCTTCTTCACTGGAGATTGGACTGGTTCGCTGATGACTTGGAAATGGTTGTCCAGTTGA 1320 0.4295 MSCCQGSIFKEKKLGVSIMATKFTRRTERTESIGGITCAYWRAGRCNRNPCRFLHAETPSPRTACGSANSAHGHRKKPYSAPKNIPKYNSKPKTALIRSNEDRGDATKVAEASKKSSSRIICKYWTNNNCVHGEKCRNLHSWSCGDGLSTVKTLHEHKKVITGIALPSGSDKLYSGSTDGTVRIWDCHTGQCAKVINLGAEVTSLINEGPWIFVGLQNAVKAWNIETISEFTLDGPKGPVRAMTVGNDTLFAGGEDGVISAWRGSSEAKSPFELVASLTGHTKAVVSLTVGRKMLYSGSMDKSIKVWDMDTLECTMTLNEHTDVVTSLICWDQYLLSSSSDCTIKVWACTEVGTLKVIYTHTEENGVVSLSGMPDAEGKHILFASCRDNSVRLYEMPSFSERGRLFAKKDVASIEVGPDGLFFTGDWTGSLMTWKWLSS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0908 439 SUPERFAMILY WD40 repeat-like 119 435 IPR036322 GO:0005515
Aed8g0908 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 311 - -
Aed8g0908 439 PANTHER - 27 437 IPR044715 -
Aed8g0908 439 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872
Aed8g0908 439 ProSiteProfiles Zinc finger C3H1-type profile. 37 58 IPR000571 GO:0046872
Aed8g0908 439 Pfam WD domain, G-beta repeat 150 186 IPR001680 GO:0005515
Aed8g0908 439 Pfam WD domain, G-beta repeat 273 308 IPR001680 GO:0005515
Aed8g0908 439 Pfam WD domain, G-beta repeat 313 347 IPR001680 GO:0005515
Aed8g0908 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 186 - -
Aed8g0908 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 317 IPR001680 GO:0005515
Aed8g0908 439 Gene3D - 35 144 - -
Aed8g0908 439 Gene3D - 205 439 IPR015943 GO:0005515
Aed8g0908 439 SMART WD40_4 354 395 IPR001680 GO:0005515
Aed8g0908 439 SMART WD40_4 311 348 IPR001680 GO:0005515
Aed8g0908 439 SMART WD40_4 398 435 IPR001680 GO:0005515
Aed8g0908 439 SMART WD40_4 147 186 IPR001680 GO:0005515
Aed8g0908 439 SMART WD40_4 226 263 IPR001680 GO:0005515
Aed8g0908 439 SMART WD40_4 271 308 IPR001680 GO:0005515
Aed8g0908 439 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Aed8g0908 439 Gene3D - 147 204 IPR015943 GO:0005515
Aed8g0908 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 195 IPR001680 GO:0005515
Aed8g0908 439 PRINTS G protein beta WD-40 repeat signature 295 309 IPR020472 -
Aed8g0908 439 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Aed8g0908 439 PRINTS G protein beta WD-40 repeat signature 173 187 IPR020472 -
Aed8g0908 439 MobiDBLite consensus disorder prediction 60 85 - -
Aed8g0908 439 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 27 437 - -
Aed8g0908 439 SMART c3hfinal6 117 142 IPR000571 GO:0046872
Aed8g0908 439 SMART c3hfinal6 32 57 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0908 Aed-Chr8 7839332 7842764 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0908 170 317 Eukaryotic Initiation Factors Gene Family AT2G46290 28.994 6.99e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0908 - - gmx:100787799 711.449