Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0904 ATGGCTACTAAGTTTACAAGAAGGACTGAGAGAACTGAGAGCATTGGTGGAATAACATGTGCCTATTGGAGGGCTGGGAGATGCAACCGAAATCCTTGCAGGTTTTTGCACGCAGAAACACCGTCACCACGTACTGCATGTGGTAGTGCCAATTCTGCTCATGGACATAGAAAAAAGCCTTATTCTGCCCCTAAGAATATCCCTAAATATAATTCAAAGCCAAAGACAGCATTGATCAGAAGTAATGAAGATAGAGGAGATGCAACAAAGGTTGCTGAGGCCTCCAAGAAATCATCATCAAGAATAATATGTAAATATTGGACCAACAATAATTGTGTACATGGTGAAAAATGTCGGAATTTACATTCATGGTCTTGTGGTGATGGGCTTTCCACCGTAAAAACCCTTCATGAACACAAGAAGGTTATCACTGGCATTGCGCTGCCTTCTGGATCCGACAAACTTTATTCCGGTAGCACTGATGGGACAGTTCGGATATGGGACTGCCATACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAATGAGGGGCCATGGATATTTGTTGGTCTACAAAATGCTGTCAAGGCTTGGAATATTGAAACAATTTCAGAGTTTACTCTTGATGGACCCAAAGGTCCAGTCCGTGCCATGACGGTTGGCAATGATACACTCTTTGCTGGTGGAGAGGATGGTGTTATTTCTGCCTGGAGAGGAAGCTCTGAAGCTAAGTCTCCTTTTGAACTGGTTGCATCACTCACTGGCCATACTAAAGCAGTGGTTTCACTTACTGTTGGACGCAAGATGCTATACTCCGGGTCCATGGACAAAAGCATAAAGGTCTGGGACATGGATACATTAGAGTGTACAATGACACTAAATGAGCACACTGATGTAGTCACTTCCCTTATTTGTTGGGACCAATATTTGTTGTCAAGTTCATCTGACTGCACAATTAAGGGTGTTGTTTCACTTTCTGGAATGCCTGATGCAGAAGGAAAACATATATTGTTTGCCTCTTGTAGAGACAATTCAGTTCGCTTGTATGAAATGCCATCATTTTCTGAGAGGGGTCGTTTATTTGCAAAGAAAGATGTTGCATCAATTGAGGTAGGTCCTGATGGCCTCTTCTTCACTGGAGATTGGACTGGTTCGCTGATGACTTGGAAATGGTTGTCCAGTTGA 1206 0.4295 MATKFTRRTERTESIGGITCAYWRAGRCNRNPCRFLHAETPSPRTACGSANSAHGHRKKPYSAPKNIPKYNSKPKTALIRSNEDRGDATKVAEASKKSSSRIICKYWTNNNCVHGEKCRNLHSWSCGDGLSTVKTLHEHKKVITGIALPSGSDKLYSGSTDGTVRIWDCHTGQCAKVINLGAEVTSLINEGPWIFVGLQNAVKAWNIETISEFTLDGPKGPVRAMTVGNDTLFAGGEDGVISAWRGSSEAKSPFELVASLTGHTKAVVSLTVGRKMLYSGSMDKSIKVWDMDTLECTMTLNEHTDVVTSLICWDQYLLSSSSDCTIKGVVSLSGMPDAEGKHILFASCRDNSVRLYEMPSFSERGRLFAKKDVASIEVGPDGLFFTGDWTGSLMTWKWLSS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0904 401 MobiDBLite consensus disorder prediction 78 93 - -
Aed8g0904 401 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 11 399 - -
Aed8g0904 401 Gene3D - 19 125 - -
Aed8g0904 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 293 - -
Aed8g0904 401 ProSitePatterns Trp-Asp (WD) repeats signature. 277 291 IPR019775 -
Aed8g0904 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 136 168 - -
Aed8g0904 401 ProSiteProfiles Zinc finger C3H1-type profile. 19 40 IPR000571 GO:0046872
Aed8g0904 401 PANTHER - 11 399 IPR044715 -
Aed8g0904 401 PRINTS G protein beta WD-40 repeat signature 344 358 IPR020472 -
Aed8g0904 401 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Aed8g0904 401 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Aed8g0904 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 299 IPR001680 GO:0005515
Aed8g0904 401 SMART c3hfinal6 14 39 IPR000571 GO:0046872
Aed8g0904 401 SMART c3hfinal6 99 124 IPR000571 GO:0046872
Aed8g0904 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 177 IPR001680 GO:0005515
Aed8g0904 401 SMART WD40_4 129 168 IPR001680 GO:0005515
Aed8g0904 401 SMART WD40_4 208 245 IPR001680 GO:0005515
Aed8g0904 401 SMART WD40_4 253 290 IPR001680 GO:0005515
Aed8g0904 401 SMART WD40_4 360 397 IPR001680 GO:0005515
Aed8g0904 401 SMART WD40_4 293 330 IPR001680 GO:0005515
Aed8g0904 401 Pfam WD domain, G-beta repeat 132 168 IPR001680 GO:0005515
Aed8g0904 401 Pfam WD domain, G-beta repeat 255 290 IPR001680 GO:0005515
Aed8g0904 401 Gene3D - 129 189 IPR015943 GO:0005515
Aed8g0904 401 ProSiteProfiles Zinc finger C3H1-type profile. 98 125 IPR000571 GO:0046872
Aed8g0904 401 SUPERFAMILY WD40 repeat-like 101 397 IPR036322 GO:0005515
Aed8g0904 401 MobiDBLite consensus disorder prediction 42 93 - -
Aed8g0904 401 Gene3D - 190 401 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0904 Aed-Chr8 7800237 7802436 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0904 152 299 Eukaryotic Initiation Factors Gene Family AT2G46290 28.994 5.97e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0904 - - gmx:100787799 658.677