Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0900 ATGGCTTCCGCAAGTGGCAATGACACTGGATCTTCTTCTTCTTCTTCTTCTTCTGGGTTTGGATCTCCATGTGGGGCATGCAAGTTCCTGAGAAGAAAGTGTGCTTCTGATTGCATCTTTGCGCCTTACTTTTGCTCAGAGCAAGGAGCAGCTAGATTCGCCGCCATTCATAAGGTGTTCGGCGCTAGCAACGTTTCAAAGATGCTCTTGCGTATACCGGCTCATCACGATCGCTTTCAGGCAATGCTCACAATCGCTTATGAAGCACAGGCTCGCGTCAGAGACCCTGTTTATGGCTGCGTCTCCCATATTTTCGCCTTGCAACAACAGGTGGCATGCTTGCAAGCACAACTAATGCAAATGAAGGCACAGCTGGATCAGAACCATGTGGAGAATAATGTTGAACAAGTAGCATTCAATCAATTTTGTCACACTTCCATGAATATTAATAACCCCATATCTCCTCAGAGCTCACTTGATTCAATTGATCATTATAGCAGCATGAGCATGCAAGATGTACAGAGCAGAGAGGATTTCACAATGCAAGCTTGCAATTCTATGAAAATGTCATATAACAACAATGACTGTGAGCTGCAAGAATTGGCACTCAGGATGATGAGGAACTAA 627 0.4466 MASASGNDTGSSSSSSSSGFGSPCGACKFLRRKCASDCIFAPYFCSEQGAARFAAIHKVFGASNVSKMLLRIPAHHDRFQAMLTIAYEAQARVRDPVYGCVSHIFALQQQVACLQAQLMQMKAQLDQNHVENNVEQVAFNQFCHTSMNINNPISPQSSLDSIDHYSSMSMQDVQSREDFTMQACNSMKMSYNNNDCELQELALRMMRN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0900 208 MobiDBLite consensus disorder prediction 1 22 - -
Aed8g0900 208 ProSiteProfiles LOB domain profile. 22 125 IPR004883 -
Aed8g0900 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 15 207 - -
Aed8g0900 208 Pfam Lateral organ boundaries (LOB) domain 23 122 IPR004883 -
Aed8g0900 208 PANTHER LOB DOMAIN CONTAINING PROTEIN 15 207 - -
Aed8g0900 208 Coils Coil 104 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0900 Aed-Chr8 7749407 7750585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0900 11 208 AS2 family AT2G42430 50.000 1.39e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed8g0900 LOB 1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0900 K13944 - gmx:100776145 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0900 8 7749407 7750585 Aed8g0900 8 7749407 7750585 ECH
Aed4g0190 4 1404360 1405617 Aed8g0900 8 7749407 7750585 PCT