Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0897 ATGGAATTCAGCAGCTATGATCAATTAGAAGATTCTTCCAAAAGCTCCAGCGAAGAAATAATCGATAATCATGACAATATTGGCACTGGCAGATCCTACGAGTGTGTGTTTTGCAAGAGAGGCTTCACCACTGCACAGGCTTTGGGAGGACACATGAACATTCACAGAAAAGATAGAGCCAACAACAACAAGGCCAAACTCAATTTTCCTTCTTCGAGTTCAACCAAGGTTGATCATCATCATCATATTCATGAGAGTAGTAATAACATTAATAACTATGCAAGCTTTCTCACAAGAGGGAGTTACTATTCTTCTGCTTCTTCTTCCACTCTTCCTGATCAAGAGCTGATGTTTAAAAAGGCTATTATATCTATGAGTGATAAGGGATTAGATAGCAACCCACCATGA 408 0.3922 MEFSSYDQLEDSSKSSSEEIIDNHDNIGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNNKAKLNFPSSSSTKVDHHHHIHESSNNINNYASFLTRGSYYSSASSSTLPDQELMFKKAIISMSDKGLDSNPP 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0897 135 SUPERFAMILY beta-beta-alpha zinc fingers 31 59 IPR036236 -
Aed8g0897 135 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 108 - -
Aed8g0897 135 MobiDBLite consensus disorder prediction 1 25 - -
Aed8g0897 135 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Aed8g0897 135 PANTHER OS07G0101800 PROTEIN 11 108 - -
Aed8g0897 135 Gene3D Classic Zinc Finger 9 109 - -
Aed8g0897 135 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Aed8g0897 135 Pfam C2H2-type zinc finger 33 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0897 Aed-Chr8 7731141 7733558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0897 33 66 C2H2 Transcription Factor Family AT5G43540 76.471 7.27e-15 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed8g0897 zf-C2H2_6 9.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0897 - - gmx:102661128 114.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0897 8 7731141 7733558 Aed8g0897 8 7731141 7733558 ECH
Aed4g0195 4 1433598 1434346 Aed8g0897 8 7731141 7733558 PCT