Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0893 ATGATGGGTGAGAAGTTTTGTGTGAGCGACGAAGACAAGGGTGTGTTGGAATCTGTTTTGGGTGCAGAGGCGGTTGCGTTTTTCATTTCAGCACTTTCCAATAATGTCTTCTCCGGCGTGGTTGCTCCGTCCGCCGGTTCCGATCCGGCTCTCCGCCAGCGCTTGTGTCAGTTTGTTGAGGGCTCCAAGTGGAACTATGCTGTGTTTTGGCAGGTTGCTGGCTTGAAGTCTGGTGGTTCTGCCTTGATTTGGGGTGATGGGCATTGCAGTGATCCCAAAGGGGAGAGGAATGGAGTTGCGAAGGACGACGAGCACGAGGTGAGAAAGAAGGTGCTGCAGAAGCTTGATGTCTACTTTGGTGGTTCTGTGTTGAAAGAGGCTAATTATGTGAGATCGGATAGGGTTTCGGATTTGCTCATGTTTTACTTGTCCTCGATGTGTTATATATTTGGTTTTGATTCGCCTTGTGGCCCGGGCAGTTCGTTCAAGTCCGGTAAACCGATTTGGGCTTCTGATGCTGCTGGCTGTTTAAACCAATTGGAATCTAGATCTTTTCTTGGGAAACTTGCTGGTCTTCAAACTGTTGTTTTTGTTCCTCTGAAGTCCGGGGTGGTGGAGCTTGGTTCATTTGAGATGGTACCAGAAGAGCAGGGTGTTGTGGAAATGGTCAGGATGACGTTTGGGGAATCCAGTCCTGGACAGGCAAAGGTGTTTCCAAAGATATTTGGGCATGAGTTAAGCCTCGGGGATACAAAATCTCAGTCTATAACTATTAGTTTCTCTCCGAAGGTGGAAGATGATCCTGGTTTTACTTCAGACTCCTATGAAGTTCAAGCATTAGGGGTGAACCATGCTTATGGAAACTCTTCCAATGGGACTTTAGGTGACGGTAATGAAGGGAAAATGTTCCCTCAATTGAATCAAATGATGGCTGGGAATTTTAATGCCCAAGCAAGGGGTCCTTGTCTAGATCTCGGTAACGAAGACTCGTCCTCAATTCATGCGGATGAGCGGAAGCCCAGGAAGAGAGGTAGAAAGCCGGCTAATGGGAGAGAGGAGCCGTTGAACCATGTTGAGGCAGAGAGACAACGACGCGAGAAGCTTAACCAGAGGTTTTACGCCTTGAGAGCCGTTGTCCCCAACATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTTATCACTGATCTCCAGATGAAGATCAAGGTGTTGGAAGCTGAAAAGAACATGATTAACAACAAGGACCAAAAGTTGTCATTGCCAGATATGGATTTTCAGGAAAGAGAGGACGACACAGTTGTGACGGTGAGATGCCCCTCTGAGATTCACCCCATTTCTAACGTCATTAAAACGTTCAGGGAGCATCAAATTGTGGCTCAAGACTCCAGTGTTTCAACTATAGATGACAAAATAGTTCATACATTCTCCATAAGAACTGAGGGAGGAGAGGCTGCTGCTATACAGTTGAAAGAAAAGCTAGAAGCATCCCTATCCAAAATTTGA 1515 0.4647 MMGEKFCVSDEDKGVLESVLGAEAVAFFISALSNNVFSGVVAPSAGSDPALRQRLCQFVEGSKWNYAVFWQVAGLKSGGSALIWGDGHCSDPKGERNGVAKDDEHEVRKKVLQKLDVYFGGSVLKEANYVRSDRVSDLLMFYLSSMCYIFGFDSPCGPGSSFKSGKPIWASDAAGCLNQLESRSFLGKLAGLQTVVFVPLKSGVVELGSFEMVPEEQGVVEMVRMTFGESSPGQAKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSYEVQALGVNHAYGNSSNGTLGDGNEGKMFPQLNQMMAGNFNAQARGPCLDLGNEDSSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMINNKDQKLSLPDMDFQEREDDTVVTVRCPSEIHPISNVIKTFREHQIVAQDSSVSTIDDKIVHTFSIRTEGGEAAAIQLKEKLEASLSKI 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0893 504 SMART finulus 358 407 IPR011598 GO:0046983
Aed8g0893 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Aed8g0893 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 420 IPR036638 GO:0046983
Aed8g0893 504 MobiDBLite consensus disorder prediction 330 363 - -
Aed8g0893 504 CDD ACT_UUR-ACR-like 436 503 - -
Aed8g0893 504 Coils Coil 398 418 - -
Aed8g0893 504 PANTHER MYC 2 503 IPR045084 GO:0003700|GO:0006355
Aed8g0893 504 Gene3D - 345 418 IPR036638 GO:0046983
Aed8g0893 504 PANTHER TRANSCRIPTION FACTOR BHLH3 2 503 - -
Aed8g0893 504 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 227 IPR025610 -
Aed8g0893 504 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Aed8g0893 504 MobiDBLite consensus disorder prediction 321 363 - -
Aed8g0893 504 CDD bHLH_AtAIB_like 349 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0893 Aed-Chr8 7670786 7672300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0893 2 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 49.016 1.94e-158 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed8g0893 bHLH-MYC_N 9.3e-43 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0893 - - gmx:100819968 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0893 8 7670786 7672300 Aed8g0893 8 7670786 7672300 ECH