LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed8g0885	ATGACAGACATATTTGAGAAGCAGTCATCTTCTGATTCTTCAAACTATGCATCAAGCAGTGGCCTATGTGATGAGGAAGATAAGGAGATGGGATATAGAGCTGCAACAACATCAAAACATTTATATGTAAGAACTAAGGATGGCAAAAATGTGATGGCAGAGGTGGTGGGTACTTTTATTTTGATGTTCTGTGTGTGTGGAATCACTGCAAGCACACGATTCCAAAATGGTGCAGTGGGGCTTCTGGAGTATGCAGCTACAGCAGGATTAACAGTGGTGGTGATAATTTACTCTATAGGGCCAATTTCTTGTGCGCACGTTAACCCAGCTGTCACAATAGCCTTTGCAGCAATGGGTCAATTCCCATGGTTCAAGGTTCCAGTTTACATAATAGGACAGACAGTAGGTTCTATGTCGGCAACATACATAGGTAGCCTTGTATACGGCATAGAATCAGAGGCCATGATGACCATGCCACTCCAAGGGTGCTACTCTGCATTCTGGGTGGAGGTTATTGCAACTTTCATCATCATGTTCCTCGTTGCAGCTTTGACATCTGAATCTCAATCAGTGGGCCATTTATCTGGCTTTGTTGCTGGAATGGCAATTGGGCTTGCTGTACTAATCACAGGGGAGAAGTGGGCCCATGATTTTGCTGGTAGAGAAAAATTGGAGTTGAGTAGAAGGGTTCAGACAAAGATGTGTGTTAAGAACAAAAGGAATATCAGATGGTGTTTATCAAAAGTTTCCACTGTAATTATACTAGTAAACTTTGTTAAGGACGAGTATAATGGCAAGACCACCGTCACACAGATAGTGGTGGCTTCCTCAATTGGGTTGTTATTGGCCGCAGCAATGCATTATCGCGTTAAGAAAATGAAAGATCGAAAGATCATTCCACGTCTCAGAATATCAAAGGCAAACCACACCCCAAAGCTTGAAAAGTTCTCTCATTACGTAGCTAGGCAAATGGGGATCAAAGACAGGAGAATTTGCCCTCATCTTTGTAAATTGGCTTCTGAATACATAAGAAAATCCGAGGGGTGTGAAGATGATCTCTACGCCTTCTTCGAGAACGAACCAGATGTGGATTCACTGTTCGTGAAGCTTGTGGAGGAGTTTGAGAGATGCATTCTTAGTTACTTTGCATTCCATTGGACCCATGGTGATATTTTGATAAGTCAGGTGTTTAGCTCTGAAGTTGAACCAAAAGCAAAGCTCAGGCACATAGTTATGGCTGCAACCAGGGAACAAAGGTTCGAGAGAGTGACCAAGAATCTGAAAGTGGCTAGAGTTTTCAACACATTAGTGGAAGAAATGAAAGCAATGGGACTTGTAACAAATGATGACTCTCGATGCACAGAAGTGATGGCTCCAATGGCTCACAGTGATAGGAGCCCAGTGCTTCTTTTCATGGGTGGTGGCATGGGAGCTGGCAAGAGCACTGTGCTTAAGGACATTCTCAAAGAACCTTTCTGGGCAGGAGCAGCAGGCAATGCTGTCATCATTGAGGCAGATGCCTTCAAAGAATCAGATGTCATCTATAAAGCCCTCAGTGCAAGAGGGCATCAGGACATGATTCGAACAGCTGAACTGGTGCACCAATCATCCACTGATGCAGCCTCATCCCTACTAGTAACAGCACTAAATGAGGGGCGTGATGTGATTATGGATGGCACACTCTCCTGGTTACCATTTGTTGTGCAGACAATAACAATGGCTAGAAACGTCCACCGCCGCCGTTACCGCATGGGAGCTGGTTACAAACTGAATGAGGATGGAACTGTGACTGAAAACTATTGGCAGCGAATTACAAGGGAAGAGCCAGAACAAGTTGGAGGCAAAAGGAGAAAACCATATAGGATAGAGCTGGTTGGAGTAGTATGTGATGCTTATCTTGCAGTCATTAGAGGCATAAGGAGAGCAATCATGTGTAGAAGAGCAGTAAGAGTGAAGTCACAATTGACATCTCACAAGAGATTTGCTGATGCATTTCCAACTTATTGCCAGCTAGTAGACATTGCCAGGCTATACAGATGGAAAGATAGAGACAAGACATTGCTGGTTGATCCAGATGAAATAGATTGTTTGAAGAGGGTTTCTACATTGAATGAAAATGCCAACAACATATATGAACTTTACAAGCACCCCAACCCAGCTTGTGAAGCTGGATCGATATGGAAAGACATTGTACTATCTCCTTCAAGGGTGAGCATCCAACAAGAGCTGAAGTACTCAATCCAAAAGGTTGAGAGACTAAAATGA	2265	0.4349	MTDIFEKQSSSDSSNYASSSGLCDEEDKEMGYRAATTSKHLYVRTKDGKNVMAEVVGTFILMFCVCGITASTRFQNGAVGLLEYAATAGLTVVVIIYSIGPISCAHVNPAVTIAFAAMGQFPWFKVPVYIIGQTVGSMSATYIGSLVYGIESEAMMTMPLQGCYSAFWVEVIATFIIMFLVAALTSESQSVGHLSGFVAGMAIGLAVLITGEKWAHDFAGREKLELSRRVQTKMCVKNKRNIRWCLSKVSTVIILVNFVKDEYNGKTTVTQIVVASSIGLLLAAAMHYRVKKMKDRKIIPRLRISKANHTPKLEKFSHYVARQMGIKDRRICPHLCKLASEYIRKSEGCEDDLYAFFENEPDVDSLFVKLVEEFERCILSYFAFHWTHGDILISQVFSSEVEPKAKLRHIVMAATREQRFERVTKNLKVARVFNTLVEEMKAMGLVTNDDSRCTEVMAPMAHSDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVIIEADAFKESDVIYKALSARGHQDMIRTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWLPFVVQTITMARNVHRRRYRMGAGYKLNEDGTVTENYWQRITREEPEQVGGKRRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVKSQLTSHKRFADAFPTYCQLVDIARLYRWKDRDKTLLVDPDEIDCLKRVSTLNENANNIYELYKHPNPACEAGSIWKDIVLSPSRVSIQQELKYSIQKVERLK	754

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed8g0885	754	ProSitePatterns	MIP family signature.	106	114	IPR022357	-
	Aed8g0885	754	PRINTS	Major intrinsic protein family signature	49	68	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aed8g0885	754	PRINTS	Major intrinsic protein family signature	169	187	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aed8g0885	754	PRINTS	Major intrinsic protein family signature	125	144	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aed8g0885	754	PRINTS	Major intrinsic protein family signature	88	112	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aed8g0885	754	PANTHER	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	259	754	-	-
	Aed8g0885	754	Gene3D	Glycerol uptake facilitator protein.	5	296	IPR023271	-
	Aed8g0885	754	Gene3D	-	450	709	IPR027417	-
	Aed8g0885	754	SUPERFAMILY	Aquaporin-like	49	211	IPR023271	-
	Aed8g0885	754	MobiDBLite	consensus disorder prediction	1	21	-	-
	Aed8g0885	754	PANTHER	UNCHARACTERIZED	259	754	IPR044802	-
	Aed8g0885	754	Pfam	Zeta toxin	461	573	IPR010488	GO:0005524\|GO:0016301
	Aed8g0885	754	Pfam	Major intrinsic protein	48	210	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aed8g0885	754	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	463	598	IPR027417	-
	Aed8g0885	754	MobiDBLite	consensus disorder prediction	1	23	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed8g0885	Aed-Chr8	7602404	7610221	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed8g0885	49	242	Major Intrinsic Protein MIP	AT1G80760	37.629	1.58e-30	120

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed8g0885	-		-	mtr:MTR_1g070385	1139.41

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed8g0885	8	7602404	7610221	Aed8g0885	8	7602404	7610221	ECH