Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0884 ATGGCTACCACAGAAGAGCCCACTGTCGCGGTGGAACCCGCTCCAGAACCTGGCAGCGCCGAGCCTCCTCCGGAGGAGAAAGAAGTGCCCAAACCTGAAACCAAGGCTAAGAAAACCAAGGAACCCAAACCTAAGAAGGTTTCCAGACCTCGCAACCCTCCTACTCACCCTTCCTACGAAGAGATGATTAAGGACGCGATTACATCGCTGAAGGAGAAAACTGGTTCGAGCCAATACGCGATTGCGAAGTTCATCGAGGAGAAGCACAAACTGCTTCCACCGAACTTCAAGAAGCTTCTTCTCTACCATTTGAAGAAGCTTGTCGCCGCTGGAAAAATCGTCAAAGTCAAAGGCTCCTTCAAGCTTCCACCGACTAGGCCTTCTGCATCTTCTTCTTCTCCTTCCTCACCGGCGAAGAAGAAGAAGCCCGCAGCTGCTAAACCCAAGCCTAAGCCAAAGCCAAAGCCCAAGCCCGCTGCCAAGGCCAAGGACACCAAAGTTACTAAATCGAAGGTGCCAGCTGCCAAGCCCAAACCAGCTGCTAAGCCCAAGGCTAAAGCTCCAGCTAAGCCAAAGCCCGCTGCTAAACCCAAGCCTGCTGTTGCTGCTGCTGCAAAACCCAAGCCTGCAGCTGCCAAGCCCAAAGCTACTAAGCCAGCTGCCAAGCCCAAGCCCGCTGCAGCCAAGCCCAAGCCAGCTGCAGCCAAGCCCGCGGCTAAGCCCAAATCAAAGCCCGCCAAGGCCTCTAGGACGTCGACGAGGACTTCACCAGGGAGAAAAGCCCCTGCTCCCAAGCCCGCACCAAAGAAAGTTGCGGTGGCGAAGAAAGCACCGGTGAAGAGTGTGAAACCAAAGAGTGTAAAGTCTCCGGCGAAAAAGGCTGCACCAAAGAGAGGGGGTAGGAAGTGA 909 0.549 MATTEEPTVAVEPAPEPGSAEPPPEEKEVPKPETKAKKTKEPKPKKVSRPRNPPTHPSYEEMIKDAITSLKEKTGSSQYAIAKFIEEKHKLLPPNFKKLLLYHLKKLVAAGKIVKVKGSFKLPPTRPSASSSSPSSPAKKKKPAAAKPKPKPKPKPKPAAKAKDTKVTKSKVPAAKPKPAAKPKAKAPAKPKPAAKPKPAVAAAAKPKPAAAKPKATKPAAKPKPAAAKPKPAAAKPAAKPKSKPAKASRTSTRTSPGRKAPAPKPAPKKVAVAKKAPVKSVKPKSVKSPAKKAAPKRGGRK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0884 302 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed8g0884 302 MobiDBLite consensus disorder prediction 157 171 - -
Aed8g0884 302 MobiDBLite consensus disorder prediction 116 302 - -
Aed8g0884 302 MobiDBLite consensus disorder prediction 21 40 - -
Aed8g0884 302 CDD H15 53 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed8g0884 302 MobiDBLite consensus disorder prediction 124 138 - -
Aed8g0884 302 PANTHER HISTONE H1 175 302 - -
Aed8g0884 302 MobiDBLite consensus disorder prediction 286 302 - -
Aed8g0884 302 PRINTS Histone H5 signature 141 155 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aed8g0884 302 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aed8g0884 302 PRINTS Histone H5 signature 178 195 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aed8g0884 302 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aed8g0884 302 PRINTS Histone H5 signature 200 219 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aed8g0884 302 PANTHER HISTONE H1.1 3 199 - -
Aed8g0884 302 PANTHER HISTONE H1.1 175 302 - -
Aed8g0884 302 Gene3D - 51 129 IPR036388 -
Aed8g0884 302 SUPERFAMILY "Winged helix" DNA-binding domain 52 129 IPR036390 -
Aed8g0884 302 PANTHER HISTONE H1 3 199 - -
Aed8g0884 302 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed8g0884 302 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed8g0884 302 MobiDBLite consensus disorder prediction 142 156 - -
Aed8g0884 302 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0884 Aed-Chr8 7592510 7594829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0884 60 173 Single Myb Histone (SMH) Gene Family AT1G49950 30.435 3.26e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0884 K11275 - gmx:100795994 164.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0884 8 7592510 7594829 Aed8g0884 8 7592510 7594829 ECH