Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0883 ATGCCGTGCCGTTCTTCTTCTTCTCATCTCGCATCTCCGGTGCCCTGCGAAGCAGTTATTGTCGTGGCTGACCATGCTTTTCTTCTTTGTTGTTGTTTTCAGGCGGACGTTGAACCAGAGGTTGCTGCTCAGGGAGGAGTGCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCCGAGGCGTTGATCTCGATGCTCTGTTGGACATGTCCACCGACGAACTCGTCAAGCTCTTCTCCGCCCGCGCCCGCAGAAGGTTCCAGCGCGGCTTGACCCGCAAACCCATGGCACTCATCAAGAAACTCCGTAAAGCGAAACGGGAGGCGCCAGCTGGTGAGAAGCCGGAGCCGGTGAGGACTCACCTTCGCAACATGATCATTGTGCCAGAGATGATTGGGAGCATTATTGGTGTTTACAACGGGAAGACCTTCAATCAAGTTGAGATTAAACCGGAAATGATTGGGCATTATCTTGCCGAGTTCTCGATCTCTTACAAGCCTGTTAAGCATGGAAGGCCTGGTATTGGTGCTACTCACTCCTCTAGGTTTATTCCTCTTAAATGA 561 0.5152 MPCRSSSSHLASPVPCEAVIVVADHAFLLCCCFQADVEPEVAAQGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0883 186 Pfam Ribosomal protein S19 84 169 IPR002222 GO:0003735|GO:0005840|GO:0006412
Aed8g0883 186 PRINTS Ribosomal protein S19 family signature 139 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Aed8g0883 186 PRINTS Ribosomal protein S19 family signature 119 138 IPR002222 GO:0003735|GO:0005840|GO:0006412
Aed8g0883 186 PRINTS Ribosomal protein S19 family signature 151 166 IPR002222 GO:0003735|GO:0005840|GO:0006412
Aed8g0883 186 TIGRFAM uS19_arch: ribosomal protein uS19 53 186 IPR005713 GO:0003735|GO:0006412|GO:0015935
Aed8g0883 186 Hamap 30S ribosomal protein S19 [rpsS]. 82 175 IPR002222 GO:0003735|GO:0005840|GO:0006412
Aed8g0883 186 Gene3D 30s Ribosomal Protein S19; Chain A 43 186 IPR023575 GO:0003735|GO:0005840|GO:0006412
Aed8g0883 186 PANTHER BNAA03G55820D PROTEIN 29 186 - -
Aed8g0883 186 SUPERFAMILY Ribosomal protein S19 89 170 IPR023575 GO:0003735|GO:0005840|GO:0006412
Aed8g0883 186 ProSitePatterns Ribosomal protein S19 signature. 139 163 IPR020934 GO:0003723
Aed8g0883 186 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 29 186 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0883 Aed-Chr8 7572323 7573469 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0883 38 186 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 89.262 2.04e-94 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0883 K02958 - zju:107412227 286.574