Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0878 ATGGCTACACCACGCAGCGAAGTGGACGTAAATCTGCATGCAGTGGTAGTACTGAATACTGATCAAACCTCGAGGACGTGGGGAATTATGACGATGATGATGATGAAGCGGTCAGTGAGAGTGAAGAGAGATGCGGTTGCAGCATGCATGACTTGCCCGCTTTGCACAAACTTCCTCAAAGATGCCACTGCTATTTCTCTATGCCTTCATACGAAGTGTATTTATGACAAAATTACAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTTGAGAAAATGAGGCCAGATAACAGTTTGCAAGATTTAAGGAACAAAATTTTCCCTTTCAAAAAAAGAAAGGAGAAGGCTCCGGTATCTGTCTCCTCAGTACCACTACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTATGTACACAGTCAACCATGACAGGAAGAAGAACAAAGCCTGCAAGAAAGGCTAGTAGCCTGCAGGGATCTAGTTTCTCCATTGAGAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCACCAAGATAATTCATGCTCACCTGACACTTCAAACAAGTCTGCTAAGAATGGTGGACAGAGTTTATCACCTTGCAAAAATAGCCAATCCATTTGCAATAGAGGACCACAGAATGGTGCTGAACCACAGGAAGCAAAATGGGATCTTTGGAAAACTTTAAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGCCTTTCAAGTCTAATGTGCAAGTGTCGGATGCTAAACTAGAACCCATGAAAGTAACTGACAGTGATGCCAAAGTTCTGAAAGCCAAAATTAAGGGAAAGAAGCGCAAGGCAAAAGTTGAAGATGAAAAGATTAGCACTGGTCATGTCTCTTCAGATACAGCAAAATTCAACAAATTGCGAAGAGTTCGCCCAAAAAAGGAACCTGCTTTTGGAGAATATAGAATGTCACCTCAGGCTGTTTTGGATGCTACTGACAGTAATCTCTTAAGGAATGATTCAATTTGGTTCTCCTTATCAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTACCGCAAATTCCTTCAAATTATGTTGAGATTAAATGCATGGGACATCCGGTGCTTCCTTCACTGCAGGTACAAAATTTGGTTGAACTGTGGCTTGATACGACGGCATCTTCAGGACACAGAATTCCAGCAACCATTGGATCCTCGGGGAAAGATTTTGTCATGATCCTAACTTATGGTCGGAAGGTCCTACACCCTTGA 1296 0.4213 MATPRSEVDVNLHAVVVLNTDQTSRTWGIMTMMMMKRSVRVKRDAVAACMTCPLCTNFLKDATAISLCLHTKCIYDKITDEELENCPVCNIDLGIVPLEKMRPDNSLQDLRNKIFPFKKRKEKAPVSVSSVPLPARRKERSLSSLVVSTPRVCTQSTMTGRRTKPARKASSLQGSSFSIEKLIKKEEELLEDHQDNSCSPDTSNKSAKNGGQSLSPCKNSQSICNRGPQNGAEPQEAKWDLWKTLNYLAEAASRSKPFKSNVQVSDAKLEPMKVTDSDAKVLKAKIKGKKRKAKVEDEKISTGHVSSDTAKFNKLRRVRPKKEPAFGEYRMSPQAVLDATDSNLLRNDSIWFSLSASENQEGDAPLPQIPSNYVEIKCMGHPVLPSLQVQNLVELWLDTTASSGHRIPATIGSSGKDFVMILTYGRKVLHP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0878 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 36 377 - -
Aed8g0878 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 132 IPR013083 -
Aed8g0878 431 MobiDBLite consensus disorder prediction 190 235 - -
Aed8g0878 431 MobiDBLite consensus disorder prediction 139 174 - -
Aed8g0878 431 MobiDBLite consensus disorder prediction 142 174 - -
Aed8g0878 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 374 427 - -
Aed8g0878 431 SUPERFAMILY RING/U-box 48 112 - -
Aed8g0878 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 374 427 IPR044807 GO:0004842
Aed8g0878 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 36 377 IPR044807 GO:0004842
Aed8g0878 431 MobiDBLite consensus disorder prediction 196 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0878 Aed-Chr8 7522592 7530511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0878 39 377 C3H Transcription Factor Family AT2G30580 48.397 3.74e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0878 K16277 - gmx:100778462 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0878 8 7522592 7530511 Aed8g1845 8 23141088 23145908 ECH
Aed8g0878 8 7522592 7530511 Aed8g0878 8 7522592 7530511 ECH
Aed4g0212 4 1532831 1538057 Aed8g0878 8 7522592 7530511 PCT