Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0872 ATGGAAGCTGGTTTCAAGAAGATGGTGTTTGAGGAAACTGAGCTCAGGCTGGGACTGGGACTAGGCACAGCAACAACAACAACAACTGAAGCTGTGAGGAAGAGAGGGTTCTCTGAAACTGAAACCGAAACTGAAACTGATGAAACAACCACCGTTGATTTGATGCTTAACCTCTCCCCCAAGGAAGCTTCTACTGCTGCTGCTGATGGAATAACAGATCCACGTGAGAAGCAGCCAAAGACTTCTTCGCCTAAGGAGAAGACTCTTCTGCTTGCAGATCCCACCAAGCCTCCTGCTAAGGCGCAAGTGGTGGGATGGCCACCGGTGAGGTCTTACCGGAAGAACCTGTTTGCTGCCCAAAAGAGCGGCGGTGGTGGCAAGGAAAGCGAGAAGAACAGCCCTAATGCAATAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAGGTGGACTTGAAGATGTACAAGAGTTACCCAGAGCTCTCTGATGCCTTGGGCAAAATGTTTAGCTCCTTCACCATTGGAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCCGACTATGTCCCGACCTATGAAGACAGGGATGGCGACTGGATGCTTGTCGGTGATGTGCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCCATTGGACTGGCACCAAGAGCCGTGGAAAAATGCAAGAACAGGAGCTAG 768 0.4883 MEAGFKKMVFEETELRLGLGLGTATTTTTEAVRKRGFSETETETETDETTTVDLMLNLSPKEASTAAADGITDPREKQPKTSSPKEKTLLLADPTKPPAKAQVVGWPPVRSYRKNLFAAQKSGGGGKESEKNSPNAISFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDYVPTYEDRDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAVEKCKNRS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0872 255 Pfam AUX/IAA family 12 246 IPR033389 -
Aed8g0872 255 PANTHER AUXIN-INDUCED PROTEIN AUX28 6 248 - -
Aed8g0872 255 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 248 IPR003311 GO:0005634|GO:0006355
Aed8g0872 255 Gene3D - 132 249 - -
Aed8g0872 255 MobiDBLite consensus disorder prediction 21 91 - -
Aed8g0872 255 SUPERFAMILY CAD & PB1 domains 133 236 - -
Aed8g0872 255 ProSiteProfiles PB1 domain profile. 137 237 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0872 Aed-Chr8 7474331 7478578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0872 130 240 B3 DNA Binding Superfamily AT3G61830 33.333 6.94e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aed8g0872 AUX_IAA 2.2e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0872 K14484 - gmx:100780214 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0872 8 7474331 7478578 Aed2g2566 2 28140937 28143963 ECH
Aed8g0872 8 7474331 7478578 Aed8g0872 8 7474331 7478578 ECH