Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0871 ATGGGAAAGTACGAAAAAGAGCTGAATCTGGAGGCTACAGAGTTGAGGTTGGGGTTGCCCGGTAGCGATGAGTCTGAGAAACGTTCTGTTGTTAGAAGCAACAACAACAAGAGATCTTCACCAGAAGCAAGTAGTGATCATCACGAAGAGTGCAACGATTCTTCTGATATCACAAGTGATGATAATAACCAAGACAACGTTGCGCTACCTGCAAAGGCACAAGTAGTGGGTTGGCCACCGGTTCGATCGTATAGGAAGAACTGTCTACAACAAAAGAAAGAAGAAGAAGGTGAAGGGGCTGGTATGATGTACATGAAAGTTAGCATGGCGGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACAAGAGCTACCCAGAACTCCTCAAGGCCTTGGGAAACATGTTCAAGTGCACCTTTGGTGAATATTCAGAAAGGGAAGGATACAATGGATCTGAATATGCTCCAACTTATGAAGACAAAGATGGGGACTGGATGCTGGTTGGAGATGTCCCATGGCACATGTTTGTGTCATCCTGTAAGAGGCTGAGAATTATGAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTTTGA 597 0.4472 MGKYEKELNLEATELRLGLPGSDESEKRSVVRSNNNKRSSPEASSDHHEECNDSSDITSDDNNQDNVALPAKAQVVGWPPVRSYRKNCLQQKKEEEGEGAGMMYMKVSMAGAPYLRKIDLKVYKSYPELLKALGNMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWHMFVSSCKRLRIMKGSEAKGLGCF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0871 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 196 IPR003311 GO:0005634|GO:0006355
Aed8g0871 198 SUPERFAMILY CAD & PB1 domains 101 188 - -
Aed8g0871 198 ProSiteProfiles PB1 domain profile. 102 189 IPR000270 GO:0005515
Aed8g0871 198 MobiDBLite consensus disorder prediction 41 55 - -
Aed8g0871 198 PANTHER AUXIN-INDUCED PROTEIN 3 196 - -
Aed8g0871 198 MobiDBLite consensus disorder prediction 14 65 - -
Aed8g0871 198 Pfam AUX/IAA family 35 196 IPR033389 -
Aed8g0871 198 Gene3D - 97 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0871 Aed-Chr8 7458541 7460075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0871 87 195 B3 DNA Binding Superfamily AT2G46530 34.862 2.62e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed8g0871 AUX_IAA 1.1e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0871 K14484 - gmx:100780752 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0871 8 7458541 7460075 Aed8g0871 8 7458541 7460075 ECH
Aed4g0220 4 1587836 1589228 Aed8g0871 8 7458541 7460075 PCT