Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0853 ATGTTCCCTGCAGCAGTTATGTCCAATTCCCTTAATTCCTTGTCCGAATTAGAGGCTACTGTCTCCTGTGGTACAAGAATCACTGCAGGACAACTCAATCATCTTGTCACAACAACCATTTCTCCCCAACAGCCTCAAAAGATCAAGAAAAAAAGAAACCTCCCTGGAAACCCAGACCCAGATGCTGAAGTGATAGCTCTATCACCGAAGACTCTTCTAGCAACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGATCAGAACCTTCAGCTTCACAGGAGAGGGCATAACCTGCCATGGAAGCTGAAGCAAAGGAGCAACAAAGAGGTGAAAAAGAAAGCCTACGTTTGCCCTGAGCCTTCATGCGTTCACCACAACCCCTCAAGGGCTTTGGGGGACCTCACAGGAATTAAGAAACACTTCTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCTAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTATCAGCAAACCAATTAGCCACAAACCCATCATTAGTCCAATCCCTCTTCGTTTTCCCAACCCAACAACACAACAACAACAACAACAACTTCATCATCAATCCCTGGGACCCAAACCCTAACCCTAGCAACAACAACAACAACATCATCAAACCTGAATCTCACAACTTACACATTCCCAACAACAACGTTTCTTCTTCATTCCTTAATGACCAGCACCACCCCAATAAGGGCATGATTATGAACTCACCCTTATCCTCCAGCGCTGCCACGTCAGCACACCTCTCAGCCACTGCGCTGCTCCAGAAGGCCGCTACCGTTGGTGCCGCCGCCATCACGGCCCCCACTCATCACGTGACTCAGCTCGACTCGATGCCGCTGCCGCTGCCACCCGATCAACGCTACAACAACAACAAAATTAGGGGCCTCAAGAGCAACAACATCAATGACGGCCTCACGAGGGACTTTCTCGGCCTCGCCAACGACGGCGGCGCGGTTGGCGTTAGCATCGACGTGAAGGACATGCTAACGTTCACTGCGGGGAGCGTAGAGTACCACCACCACCAACAACCCTACATTAATAACTCGCTTTTCAAGCCCCAACAAGGTTTTGGATTTCTTGGGACAACCACTGGCCCCGAATCCTGGGGAAATTGTGAGTAA 1296 0.4838 MFPAAVMSNSLNSLSELEATVSCGTRITAGQLNHLVTTTISPQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATNPSLVQSLFVFPTQQHNNNNNNFIINPWDPNPNPSNNNNNIIKPESHNLHIPNNNVSSSFLNDQHHPNKGMIMNSPLSSSAATSAHLSATALLQKAATVGAAAITAPTHHVTQLDSMPLPLPPDQRYNNNKIRGLKSNNINDGLTRDFLGLANDGGAVGVSIDVKDMLTFTAGSVEYHHHQQPYINNSLFKPQQGFGFLGTTTGPESWGNCE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0853 431 SMART c2h2final6 154 174 IPR013087 -
Aed8g0853 431 SMART c2h2final6 78 100 IPR013087 -
Aed8g0853 431 SMART c2h2final6 119 149 IPR013087 -
Aed8g0853 431 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Aed8g0853 431 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Aed8g0853 431 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Aed8g0853 431 Gene3D Classic Zinc Finger 147 211 - -
Aed8g0853 431 Gene3D Classic Zinc Finger 57 126 - -
Aed8g0853 431 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 406 - -
Aed8g0853 431 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 12 406 - -
Aed8g0853 431 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0853 Aed-Chr8 7237574 7241033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0853 32 392 IDZ Gene Family AT4G02670 52.368 9.62e-122 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed8g0853 zf-C2H2 0.0042 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0853 K25870 - gmx:100780056 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0234 4 1679049 1683910 Aed8g0853 8 7237574 7241033 PCT
Aed2g2465 2 27475737 27479918 Aed8g0853 8 7237574 7241033 PCT