LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed8g0851	ATGATTCCGAAGACTCCGTCATGGCACCTATTACTCGCGTTAGGGTTTCTGCTTTGCGCCACAATCCCCTTCGCTCACGCCGAATCGTCTACGTGCTTGACGGTCTACAACAGCGGCGGCGCTCCGGCGGTGTTCCAATCCCCAAAATGCCCTCGCTGGAAGCTCTCCGATTACGATTCCGATCCCCCTCCCCAAACCGCCACGCGTTGCCAAACCGAGATGCTCCAGGGCCGCAGAAACTCGCAAGAGGATCGCACTCTCTGCGTCCTCGATGCTCGCATTCCCTTCCCCGGTGCGAACGGGATCAAGGAGGTTTCGGTTGGAATTGTGGCGGTTTTCGACGGTCATAACGGTGCGGAAGCTAGTGAGATGGCGTCGAAGCTTTTGGTGGAGTATTTCGTTCTGCATACTTATTTTCTTCTCGATGCCGCCTTTTCTGTTATTTCGAGGACGTCACCAGAGATTCTGATTCACAAGAGAGATCGTGATCATGTAAACCTACTGCATAGATGGAAAGAGATTCTAGGTTTGGAAGGGCATGAACTGCATTTTGAAAGGTTTCAGAATACATTTTCTCCAAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCGTTGTTGAGAGCAGTTCATGACATTGATGCTAAGTTTTCTGAGGAAGCCTCTAGAAATAATCTTCACTCAGGATCTACAGCAACCATTGTTTTGGTAGCAGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCATCTTGTGCTCTGAAAATTTTCAGTCTCCCAGAGAGGCTAAAGACATGTTAAAAAAGCTATATAGGCAGAAAGAGCATGGCAGTTCTGTTTCTGTGTGGGATCGTGAAAAGTACAGATTGGCTTCCTCCCATGGGCTCACTCATTTTGCAGTAAAGGAATTGACCAGTGATCATCATCCAGACAGAGATGATGAAAGAATTCGGGTGGAAACAGCTGGTGGTCAAGTTCAAAATTGGGGTGGTGTGCCTCGCATAAATGGTCAACTGGCTATTACACGGGCTATTGGTGATGTACTCTTTAAAAGTTATGGTGTTATATCTGCACCAGAAGTAACTGATTGGCAGCCTCTGACTGCTAATGATAGCTATTTGGTGGTAGCATCAGATGGTGTATTTGAGAAGATGAGCCTGCAGGATGTCTGTGATTTGTTGTGGGAAGTACACCATTCCAGTAACATGGGATCAGAGTGTACCCCTGCATCTTCCTATTCGTTGGCAGATTTAATTGTTAATACTGCCTTCAAAAAGGGCAGTATGGACAATGTGGCAGCAATTGTCATTCCTCTGGAGTCAATCAATTCTTCTGCATACTCGCTTGGGGGAAGCTATATTGGAAAGAGAGATACAGCAGTTGTGCTGCTTTTCACGGCCAGAATCGTGGTTTTGACCTACCCCACTCTCATGGCTTCGTCAATCTCTCACTTCTGCACTCAGAATCCTTGCCCCAACCTTACAACCCTTCGGCAATCCCTTCCGTCGGCGGATTCTGGCAGTGCTTCCGTTAATGACATCAGGTCTGATCTTATGCACTTGGAGCACCCTCATCTGGTAGATACCAAGTTTAAACGAATATTGGTTGAAGTAAAAGATGGCGATTTTGGATGTTTTTATTTATCTGAAAATCTTGATAAACCAGAGAACTCTAAGCAGATTGCCAAAAAAACTGACTGGGAAGACTATTTGTATGAACTACCTCAGCCTCGACCAGATGCCCTTCGTCAACAGGCCACTTCAGGTGGCCCTGTACATTTATACAATAACCAAAACTTTTGCTTTCACCTTGGTCCAACTTTTAATGAAACTGAAGACCAATGCATAAATCCTGAAGGCTTTGCCAATTTCATTGGTCTTCTTGAATCAATTCCTTTACATGATACTGGTTCCAGTAATGGATCTTCCGATTATTCAATGCCTGATTTAAGGTATGTATTGAAGAAGAATTTTGGACGTGGGTCATATGGTGAAGTATGGTTGGCTTTTCATTGGAATTGTAATCAAGATAGTAATGCTGCAAAAATGGGCAAGGATGACAAAAATACAACCAGCAGCTCAACTGATTCTGATTGTCAGGATGGTCCTTCTAACTACACCCTGTACATTTTGAAACGTATAATGGTGGAGAAGGGGTCTGCTGTTTACTTGAGTGGGCTGAGGGAGAAGTATTTTGGAGAAATTTTCTTAAATGCCTCTACATGCTTTGAAGATCCACTATCAGCTGGAAAATCAAACTGTGTCTTAGAAACATCACAGTTTGATCCTGAGAAATCATTTCCAAACAAATTTCGGCTACAAAGAACCACATATGAAGAAGGTTTGAACCATATTGCAAGATATGTAGAATCTTTTGAGTCTCAAGCCAATGAAATATGGCTTGTATTTAGTTATGAAGGTGTGTCACTGTCAAAACTTCTATATGCCGTGGAAGATGCATATGGTACTGCTGAGAAAGAAAGACTTGAGCAACATGTTCAGATACTACGTCCATCAAAGTGGTGGCATTGGTTAAAAACAACAGAAGAAGGGCAAGCAGAAATGCGCAACCTTATCTGGCAGCTGTTATTAGCCCTCAAGTCCTGTCATGATCGCAACATCACACACAGAGATATTAAACCTGGTAAGACATGGAAAGGGTCTTACTATCAGGTATCAGTTATGTATCAGTGGATTCTGTGCCTTGTAGTTATGAATCTTATGATGACTCTCAGCACAGATAGAATTGCAAAACTTGTTTGGCGTATTATTGACTTTGGAAGTGGAATTGATGAATTCACATTAAAGCATTTATATGGTTCCACTGGGCCTTCTAGAGCTGAACAAACCTATGAGTATACTCCTCCTGAAGCGTTGCTAAATGCTGCATGGTATCAAGGGCCAACAAGCTCAACTTTGAAACTTAGATCATTCATGGAATTGTGCATTTTAATCCCTGGGATTTCCAGGTCCAGCAGTTCCTCAAAAAAGTATCACACAGTGAACCAAGCTAGAGTTTCACCTGCATCTTGGAAATGCTCCGAAGAATTCTTCTCTCGTCAAATTAAGAATCGAGATCCTCTTAAAATAGGTTTTTCAAATATCTGGGCTTTACGGTTAGTGCGCCATTTGTTACATTGGGATCCAGAGGATCGGCCAAGTATTGATGAGGCTCTGCAACATCCTTATTTCCAACATCCCCCAAGAGAATAA	3225	0.4295	MIPKTPSWHLLLALGFLLCATIPFAHAESSTCLTVYNSGGAPAVFQSPKCPRWKLSDYDSDPPPQTATRCQTEMLQGRRNSQEDRTLCVLDARIPFPGANGIKEVSVGIVAVFDGHNGAEASEMASKLLVEYFVLHTYFLLDAAFSVISRTSPEILIHKRDRDHVNLLHRWKEILGLEGHELHFERFQNTFSPNFDDSFHLEILKEALLRAVHDIDAKFSEEASRNNLHSGSTATIVLVADDKILVANIGDSKAILCSENFQSPREAKDMLKKLYRQKEHGSSVSVWDREKYRLASSHGLTHFAVKELTSDHHPDRDDERIRVETAGGQVQNWGGVPRINGQLAITRAIGDVLFKSYGVISAPEVTDWQPLTANDSYLVVASDGVFEKMSLQDVCDLLWEVHHSSNMGSECTPASSYSLADLIVNTAFKKGSMDNVAAIVIPLESINSSAYSLGGSYIGKRDTAVVLLFTARIVVLTYPTLMASSISHFCTQNPCPNLTTLRQSLPSADSGSASVNDIRSDLMHLEHPHLVDTKFKRILVEVKDGDFGCFYLSENLDKPENSKQIAKKTDWEDYLYELPQPRPDALRQQATSGGPVHLYNNQNFCFHLGPTFNETEDQCINPEGFANFIGLLESIPLHDTGSSNGSSDYSMPDLRYVLKKNFGRGSYGEVWLAFHWNCNQDSNAAKMGKDDKNTTSSSTDSDCQDGPSNYTLYILKRIMVEKGSAVYLSGLREKYFGEIFLNASTCFEDPLSAGKSNCVLETSQFDPEKSFPNKFRLQRTTYEEGLNHIARYVESFESQANEIWLVFSYEGVSLSKLLYAVEDAYGTAEKERLEQHVQILRPSKWWHWLKTTEEGQAEMRNLIWQLLLALKSCHDRNITHRDIKPGKTWKGSYYQVSVMYQWILCLVVMNLMMTLSTDRIAKLVWRIIDFGSGIDEFTLKHLYGSTGPSRAEQTYEYTPPEALLNAAWYQGPTSSTLKLRSFMELCILIPGISRSSSSSKKYHTVNQARVSPASWKCSEEFFSRQIKNRDPLKIGFSNIWALRLVRHLLHWDPEDRPSIDEALQHPYFQHPPRE	1074

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed8g0851	1074	SMART	serkin_6	656	1068	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed8g0851	1074	CDD	PP2Cc	76	443	IPR001932	-
	Aed8g0851	1074	Pfam	Protein kinase domain	852	1068	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed8g0851	1074	SUPERFAMILY	Protein kinase-like (PK-like)	655	1070	IPR011009	-
	Aed8g0851	1074	Gene3D	Transferase(Phosphotransferase) domain 1	851	1072	-	-
	Aed8g0851	1074	PANTHER	PROTEIN PHOSPHATASE 2C 50-RELATED	21	643	-	-
	Aed8g0851	1074	ProSiteProfiles	Protein kinase domain profile.	656	1068	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed8g0851	1074	Gene3D	-	65	448	IPR036457	-
	Aed8g0851	1074	Pfam	Protein phosphatase 2C	202	436	IPR001932	-
	Aed8g0851	1074	PANTHER	ALPHABET, ISOFORM E-RELATED	21	643	-	-
	Aed8g0851	1074	ProSiteProfiles	PPM-type phosphatase domain profile.	69	443	IPR001932	-
	Aed8g0851	1074	SUPERFAMILY	PP2C-like	68	445	IPR036457	-
	Aed8g0851	1074	SMART	PP2C_4	61	441	IPR001932	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed8g0851	Aed-Chr8	7202090	7220008	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed8g0851	720	1072	PP2C-type Phosphatase Gene Family	AT3G63340	50.369	8.76e-117	363

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed8g0851	-		-	gmx:100781476	1765.36