Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0840 ATGGAGCAGTATGAAATTCTAGAACAGATTGGAAGAGGTTCCTTTGCTTCTGCTCTGCTTGTCAGGCACAAACACGAAAACAAAAAGTATGTTCTTAAGAAGATCCGTCTTGCCCGTCAGACTGACAGAACTCGTAGATCTGCTCACCAAGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATCGTCGAATATAAAGATTCCTGGGTGGAAAAGGGTTGTTTTGTATGTATCGTCATTGGCTATTGTGTAGGAGGAGACATGACGGAAGCTATTAAAAAAGCCAATGGTGTTCATTTTCCTGAAGAGAGGCTCTGTAAGTGGCTGGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATGCGATGATCTTGCTTCCTCAGTTGTGGGGACTCCAAGTTATATGTGTCCTGAGCTTCTTGCTGATATACCCTATGGCTCCAAGTCAGATATTTGGTCTCTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAACCAGCTTTTAAAGCTCTTAAAGATGACACTCGAGGGCTTGTTAAGAGTATGCTGCGAAAGAATCCAGAGCTTCGGCCAAGTGCTGCAGAGTTGCTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCCAGAAGAAGCACTTATCCATTCCAATGGTCTGACTCAAACTATGTAAGGAGGACTCAGTTTATCGAGCCAGGATCTGTTTCTACTCTTTCTGACAGAGACAAACGATTGTCATTCAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAATTAGGTTCTGCGTGTTCTACTCAAAGAGCACTAGGATTCTCTACTTGTTCAAAAGAGAAGCACTATGAACTATCTACAGGCCGTGTCCGTGAAGAATGCAATTCTAACAAGTCAAGAGACACAAAGTCCTCAACTGCTGATAGGATGCCAAGATTGGGAACAGCTAAGGAATATGCCACTCCCCGACGCCAGACAATACCATCAAAGATATTCCATACTGGTTCCAAGCGTGAGTTACTTCCAGCATCTTTCACTCCAAGTGGTAAATTCGCCCCACAAACTCGCAGAGCTTCCCTTCCACTGCCTAGCAGAACCATGGGCACGACCACCCCTTATACTTATAGAGCCAATGTTGGTCTTCTTCAAGGTGTGGACTCTCCTGATATTTCTGTTAACGCTCCGCGAATTGACAAGATTGCTGAATTCCCTCTGGCCTCTTGTGATGATCCTCTCTTCCCTGTCCGTGGAACTTCATCAACTTCGGCTCAGTGCTCATCCGGTTCCCCGAAGAGTGGTGATGGTTCAATCACCAAGGACAAGTGTACAATCCAAGTTGTGGACAAGGCCAGTGTTCCTTCCAGTGGAAGTGTGGCTTGTCCTGCTGTTCCAGCTTCTGAACATGCTGCTGTTTCAAGCCACTCCTCTGCTGAGTTTGGCAGGTACAGGTTTGACACCTCGTCTTACCAGCAACGTGCGGAGGCATTGGAGGGTTTGCTCGAGTTCTCTGCACGGCTCCTACAGCAACAGAGGTTTGAAGAACTCGGAGTGTTGTTGAAGCCATTTGGTCCTGAAAAGGTTTCCCCAAGAGAAACAGCTATCTGGTTGGCTAAGAGCTTCAAGGAAACTGTGGCCTAA 1764 0.4478 MEQYEILEQIGRGSFASALLVRHKHENKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCVGGDMTEAIKKANGVHFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALKDDTRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFQWSDSNYVRRTQFIEPGSVSTLSDRDKRLSFSNDRALNPSISGTELGSACSTQRALGFSTCSKEKHYELSTGRVREECNSNKSRDTKSSTADRMPRLGTAKEYATPRRQTIPSKIFHTGSKRELLPASFTPSGKFAPQTRRASLPLPSRTMGTTTPYTYRANVGLLQGVDSPDISVNAPRIDKIAEFPLASCDDPLFPVRGTSSTSAQCSSGSPKSGDGSITKDKCTIQVVDKASVPSSGSVACPAVPASEHAAVSSHSSAEFGRYRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETVA 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0840 587 PANTHER SERINE/THREONINE-KINASE NEK4 211 576 - -
Aed8g0840 587 MobiDBLite consensus disorder prediction 385 411 - -
Aed8g0840 587 MobiDBLite consensus disorder prediction 460 480 - -
Aed8g0840 587 ProSiteProfiles Protein kinase domain profile. 4 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g0840 587 Gene3D Phosphorylase Kinase; domain 1 1 78 - -
Aed8g0840 587 SMART serkin_6 4 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g0840 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Aed8g0840 587 MobiDBLite consensus disorder prediction 390 411 - -
Aed8g0840 587 CDD STKc_Nek 3 237 - -
Aed8g0840 587 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 211 576 - -
Aed8g0840 587 Gene3D Transferase(Phosphotransferase) domain 1 79 252 - -
Aed8g0840 587 PANTHER SERINE/THREONINE-KINASE NEK4 1 206 - -
Aed8g0840 587 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 206 - -
Aed8g0840 587 Pfam Protein kinase domain 4 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g0840 587 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Aed8g0840 587 SUPERFAMILY Protein kinase-like (PK-like) 1 292 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0840 Aed-Chr8 7117108 7122303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0840 10 268 MAP Kinase Kinase Kinase AT1G53570 27.000 4.63e-32 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Aed8g0840 Pkinase 2e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0840 K08857 - gmx:100810347 1035.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0239 4 1716095 1724215 Aed8g0840 8 7117108 7122303 PCT