LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed8g0808	ATGGAGGTGAGTGCTGAGGAGGCGTCACTCCAAAGAAGCCAACAACTTAGAGAGCTCTATGAATCACTGTCCGCTGGAGAGACAAACCCGCCGACTCGACGGCCGTGTGCCGCCTTGTCGCCGGAGGACTTAACGGAATCCGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTTCTGGTGTTGGGTTGCCTGGAAAGGCATATGCTAGGAGGCAGCATGTATGGCTCACAGGTGCAAACGAAGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGACCGTGGTGTGCATTCCTTTGTTGGACGGCGTGGTTGAGTTTGGCACAACGGATAAGGTTCAAGAAGATCTTAACTTCATCCAACACGTCAAGACATTCTTCATAGACCACAACAATCCTCTGCCGCCCAAGCCCGCCCTGTCGGAGCATTCAACCTCTAACCCCACCTCCTCCTCCGACCACATCCCCGCCGTCATGTACACCGTCGCAGACCCCCCGCCGGTCGCCGTTCCCAACAACGACAACATGGACGAGGACGAGGAGGAAGAGGAGGAGGACGAGGAGGAAGAAGAAGAGGAATCCGGTTCCGATGACGGAACCGGAGACCGCACAGCTCGCCGAACCCCGACGCCAGTCATGACGGCGGAGCCGAGCGAGCTGATGCAGATGGAGATGCCGGAGGACATCCGGATCGGGTCTCCGAACGACGGGTCAAACAACCTGGACTCGGACTTCCACTTGCTGGCGGTGAGTCAGGGAGGAGGGAGCGCGGCGGGGCAGGCTGAGTCGACCCGGAGGTGGGGCCCGAGTCAAGATCTACTGCAAGTTCAACTACCACCCTCAGTCCTTCATCCATTAGAAGACTTGACCCAAGAGGACACACACTACTCTCAAACGGTATCCAACATCCTCCAAAACCAGTCCAGCCGGTGGCCCGCCTCACCCTCCTCCGTTGGCTACATCACATACTCCACGCATTCACCTTTCGCAAAATGGAGCAGCCGCGCCAACCACCTCTTCCACCCGGCGGCGGACGGCACCAGCCAGTGGCTCCTCAAGTACATTCTCTTCACCGTCCCGTACCTCCACGCCAAGAACCACCCCAGCGAGAGTTCTCCCCAAACCGCTGCGGACACCAAGCTCCGCGGCAAGGGAACCCCGCAGGACGAGCTCAGCGCCAACCACGTCCTTGCCGAGCGCCGCCGCCGCGAGAAGCTGAACGAAAGGTTCATTATCCTGCGCTCGCTGGTAACAGTTCAGAGGACGAGTAGCAGTTCGAGCAAGGAGCAACAGAGGAGTGGGGTGACGATGATGGAGAAGAGGAAGGTGAGGATAGTGGAAGGCGTGGCGGCAAAGGCGAAGGCGGTGGAGGTCGAGGCCTCGACGTCGGTGCAAGTTTCGATCATAGAGAGCGACGCGCTTTTGGAGATAGAGTGTGGTCACAGAGAAGGGTTGCTTCTGGACGTGATGCAGATGCTGAGGGAGGTGAGGATAGAGGTAATAGGGGTGCAGTCGTCGCTTAACAATGGGGTTTTCGTGGCGGAGTTGAGGGCTAAGGTGAAGGAACATGCCAACGGGAAGAAGGTCAGCATTGTGGAAGTGAAGAGGGCACTTAACCAAATTATACCCCACGCTGTTGACTAA	1653	0.5711	MEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKTVVCIPLLDGVVEFGTTDKVQEDLNFIQHVKTFFIDHNNPLPPKPALSEHSTSNPTSSSDHIPAVMYTVADPPPVAVPNNDNMDEDEEEEEEDEEEEEEESGSDDGTGDRTARRTPTPVMTAEPSELMQMEMPEDIRIGSPNDGSNNLDSDFHLLAVSQGGGSAAGQAESTRRWGPSQDLLQVQLPPSVLHPLEDLTQEDTHYSQTVSNILQNQSSRWPASPSSVGYITYSTHSPFAKWSSRANHLFHPAADGTSQWLLKYILFTVPYLHAKNHPSESSPQTAADTKLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVTVQRTSSSSSKEQQRSGVTMMEKRKVRIVEGVAAKAKAVEVEASTSVQVSIIESDALLEIECGHREGLLLDVMQMLREVRIEVIGVQSSLNNGVFVAELRAKVKEHANGKKVSIVEVKRALNQIIPHAVD	550

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aed8g0808	550	Pfam	Helix-loop-helix DNA-binding domain	396	431	IPR011598	GO:0046983
Aed8g0808	550	MobiDBLite	consensus disorder prediction	137	220	-	-
Aed8g0808	550	PANTHER	TRANSCRIPTION FACTOR TT8	1	547	-	-
Aed8g0808	550	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	395	430	IPR036638	GO:0046983
Aed8g0808	550	Coils	Coil	176	196	-	-
Aed8g0808	550	MobiDBLite	consensus disorder prediction	177	200	-	-
Aed8g0808	550	MobiDBLite	consensus disorder prediction	141	159	-	-
Aed8g0808	550	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	393	451	IPR011598	GO:0046983
Aed8g0808	550	MobiDBLite	consensus disorder prediction	369	384	-	-
Aed8g0808	550	Pfam	bHLH-MYC and R2R3-MYB transcription factors N-terminal	5	130	IPR025610	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed8g0808	Aed-Chr8	6863440	6872941	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed8g0808	233	547	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G09820	35.890	5.58e-42	156

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Aed8g0808		bHLH-MYC_N	1e-30	CL0161

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed8g0808	-		-	gmx:100786815	836.254

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed8g0808	8	6863440	6872941	Aed8g0808	8	6863440	6872941	ECH

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