Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0808 ATGGAGGTGAGTGCTGAGGAGGCGTCACTCCAAAGAAGCCAACAACTTAGAGAGCTCTATGAATCACTGTCCGCTGGAGAGACAAACCCGCCGACTCGACGGCCGTGTGCCGCCTTGTCGCCGGAGGACTTAACGGAATCCGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTTCTGGTGTTGGGTTGCCTGGAAAGGCATATGCTAGGAGGCAGCATGTATGGCTCACAGGTGCAAACGAAGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGACCGTGGTGTGCATTCCTTTGTTGGACGGCGTGGTTGAGTTTGGCACAACGGATAAGGTTCAAGAAGATCTTAACTTCATCCAACACGTCAAGACATTCTTCATAGACCACAACAATCCTCTGCCGCCCAAGCCCGCCCTGTCGGAGCATTCAACCTCTAACCCCACCTCCTCCTCCGACCACATCCCCGCCGTCATGTACACCGTCGCAGACCCCCCGCCGGTCGCCGTTCCCAACAACGACAACATGGACGAGGACGAGGAGGAAGAGGAGGAGGACGAGGAGGAAGAAGAAGAGGAATCCGGTTCCGATGACGGAACCGGAGACCGCACAGCTCGCCGAACCCCGACGCCAGTCATGACGGCGGAGCCGAGCGAGCTGATGCAGATGGAGATGCCGGAGGACATCCGGATCGGGTCTCCGAACGACGGGTCAAACAACCTGGACTCGGACTTCCACTTGCTGGCGGTGAGTCAGGGAGGAGGGAGCGCGGCGGGGCAGGCTGAGTCGACCCGGAGGTGGGGCCCGAGTCAAGATCTACTGCAAGTTCAACTACCACCCTCAGTCCTTCATCCATTAGAAGACTTGACCCAAGAGGACACACACTACTCTCAAACGGTATCCAACATCCTCCAAAACCAGTCCAGCCGGTGGCCCGCCTCACCCTCCTCCGTTGGCTACATCACATACTCCACGCATTCACCTTTCGCAAAATGGAGCAGCCGCGCCAACCACCTCTTCCACCCGGCGGCGGACGGCACCAGCCAGTGGCTCCTCAAGTACATTCTCTTCACCGTCCCGTACCTCCACGCCAAGAACCACCCCAGCGAGAGTTCTCCCCAAACCGCTGCGGACACCAAGCTCCGCGGCAAGGGAACCCCGCAGGACGAGCTCAGCGCCAACCACGTCCTTGCCGAGCGCCGCCGCCGCGAGAAGCTGAACGAAAGGTTCATTATCCTGCGCTCGCTGGTAACAGTTCAGAGGACGAGTAGCAGTTCGAGCAAGGAGCAACAGAGGAGTGGGGTGACGATGATGGAGAAGAGGAAGGTGAGGATAGTGGAAGGCGTGGCGGCAAAGGCGAAGGCGGTGGAGGTCGAGGCCTCGACGTCGGTGCAAGTTTCGATCATAGAGAGCGACGCGCTTTTGGAGATAGAGTGTGGTCACAGAGAAGGGTTGCTTCTGGACGTGATGCAGATGCTGAGGGAGGTGAGGATAGAGGTAATAGGGGTGCAGTCGTCGCTTAACAATGGGGTTTTCGTGGCGGAGTTGAGGGCTAAGGTGAAGGAACATGCCAACGGGAAGAAGGTCAGCATTGTGGAAGTGAAGAGGGCACTTAACCAAATTATACCCCACGCTGTTGACTAA 1653 0.5711 MEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKTVVCIPLLDGVVEFGTTDKVQEDLNFIQHVKTFFIDHNNPLPPKPALSEHSTSNPTSSSDHIPAVMYTVADPPPVAVPNNDNMDEDEEEEEEDEEEEEEESGSDDGTGDRTARRTPTPVMTAEPSELMQMEMPEDIRIGSPNDGSNNLDSDFHLLAVSQGGGSAAGQAESTRRWGPSQDLLQVQLPPSVLHPLEDLTQEDTHYSQTVSNILQNQSSRWPASPSSVGYITYSTHSPFAKWSSRANHLFHPAADGTSQWLLKYILFTVPYLHAKNHPSESSPQTAADTKLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVTVQRTSSSSSKEQQRSGVTMMEKRKVRIVEGVAAKAKAVEVEASTSVQVSIIESDALLEIECGHREGLLLDVMQMLREVRIEVIGVQSSLNNGVFVAELRAKVKEHANGKKVSIVEVKRALNQIIPHAVD 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0808 550 Pfam Helix-loop-helix DNA-binding domain 396 431 IPR011598 GO:0046983
Aed8g0808 550 MobiDBLite consensus disorder prediction 137 220 - -
Aed8g0808 550 PANTHER TRANSCRIPTION FACTOR TT8 1 547 - -
Aed8g0808 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 395 430 IPR036638 GO:0046983
Aed8g0808 550 Coils Coil 176 196 - -
Aed8g0808 550 MobiDBLite consensus disorder prediction 177 200 - -
Aed8g0808 550 MobiDBLite consensus disorder prediction 141 159 - -
Aed8g0808 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 393 451 IPR011598 GO:0046983
Aed8g0808 550 MobiDBLite consensus disorder prediction 369 384 - -
Aed8g0808 550 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 130 IPR025610 -
Aed8g0808 550 MobiDBLite consensus disorder prediction 369 396 - -
Aed8g0808 550 Gene3D - 389 461 IPR036638 GO:0046983
Aed8g0808 550 PANTHER TRANSCRIPTION FACTOR TT8 1 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0808 Aed-Chr8 6863440 6872941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0808 233 547 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 35.890 5.58e-42 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed8g0808 bHLH-MYC_N 1e-30 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0808 - - gmx:100786815 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0808 8 6863440 6872941 Aed8g0808 8 6863440 6872941 ECH