Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0762 ATGGCGGAGGGGAAGGAAGAGAGCAAATCTAGCGAGGAAAGTGTGAAGCTTTTCGTGGGTCAAGTGCCGAAGCGCATGGAAGAAGATGAAGTGCTTGCAATGTTCAAGGAGTTCGCTCTCGTTGACGAGGTCAACATCATCAGAGACAAAGCTACTCGTGCCTCACGAGGTTGTTGTTTTATAATTTGTCCGACCAGGGAAGAAGCGGATAAGGCGGTCAGTGCCTGTCATAACAAGAAAACGCTTCCTGGGGCATCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAATTGGAAAGATTAGAGCACAAACTCTTTATCGGCATGCTTCCAAAGAATATTTCTGAAGATGAGGTCTCTGATCTTTTCTCAAAGTATGGAACTATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCTGACAAGTAAAGGATGTGCGTTTTTGAAGTATGAAACCAAAGAACAAGCCCTTGCTGCTCTTGAGGCAATCAATGGAAAGCATACAATGGAGGGTTCAAGTGTTCCTTTGGTTGTTAAATGGGCAGATACTGAAAAGGAAAGACTAGCTCGAAAGGCACAAAAAGCACAGTCCCAAGTTTCTGACATGCCGCATGCTGATCCTCAGCACCCCTCATTATATGGAGCCTTGCCAATGGGTTATGTTCCTTCATACAATGGATACGGTTATCAGGCTCCGGGGGGTTATGGGCTCATGCCATACCGTTATCCGCCAATGCAGAATCAACCAGGTTACATGAACCAAGTAAATGCAGTGAGGCCTGATCTTGGTCACAGTATGAACCCTAGAAACTATCTTGCACCTCCTGCAAGTTACATCAGCTCTTATCCTGCCGTGCCAGGTACACAGCATCCAATGGCATATCCCAGAGGAATTATAAGTCCACAGCCAATGAGTACTTCTCCTGGTTCTGTTTCACCTGCAGGTGGGAATGGCCACTCTTCATCTTCAGGTTCCAGTAAAAGTTCTAGTGGTCAGATTGAAGGACCACCCGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGACCAAGAGCTTGCAACTGCATTTCAACCGTTTGGTATAGTTTTGAGTGCTAAAATTTTTGTTGATAAAGTAACGGGTGTAAGCAAGTGTTTTGGGTTTGTTAGTTATGATACTCCAGAAGCTGCTGAAGCTGCCATTAGTAGGATGAATGGTTGCCAATTAGGTGGCAAGAAATTAAAGGTTCAGCTTAAGAGGGATAATAACAACAAACAGAGTAAGATTTACTGA 1281 0.4403 MAEGKEESKSSEESVKLFVGQVPKRMEEDEVLAMFKEFALVDEVNIIRDKATRASRGCCFIICPTREEADKAVSACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEDEVSDLFSKYGTIKDLQILRGSQLTSKGCAFLKYETKEQALAALEAINGKHTMEGSSVPLVVKWADTEKERLARKAQKAQSQVSDMPHADPQHPSLYGALPMGYVPSYNGYGYQAPGGYGLMPYRYPPMQNQPGYMNQVNAVRPDLGHSMNPRNYLAPPASYISSYPAVPGTQHPMAYPRGIISPQPMSTSPGSVSPAGGNGHSSSSGSSKSSSGQIEGPPGANLFIYHIPQEYGDQELATAFQPFGIVLSAKIFVDKVTGVSKCFGFVSYDTPEAAEAAISRMNGCQLGGKKLKVQLKRDNNNKQSKIY 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0762 426 Gene3D - 316 425 IPR012677 -
Aed8g0762 426 Gene3D - 100 191 IPR012677 -
Aed8g0762 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Aed8g0762 426 Coils Coil 178 198 - -
Aed8g0762 426 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Aed8g0762 426 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Aed8g0762 426 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Aed8g0762 426 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Aed8g0762 426 MobiDBLite consensus disorder prediction 293 333 - -
Aed8g0762 426 CDD RRM1_2_CELF1-6_like 16 92 - -
Aed8g0762 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Aed8g0762 426 CDD RRM3_CELF1-6 341 413 - -
Aed8g0762 426 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Aed8g0762 426 PANTHER RNA BINDING PROTEIN 7 411 - -
Aed8g0762 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Aed8g0762 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 411 IPR000504 GO:0003723
Aed8g0762 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 167 IPR000504 GO:0003723
Aed8g0762 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 417 IPR000504 GO:0003723
Aed8g0762 426 SUPERFAMILY RNA-binding domain, RBD 103 421 IPR035979 GO:0003676
Aed8g0762 426 MobiDBLite consensus disorder prediction 300 333 - -
Aed8g0762 426 CDD RRM1_2_CELF1-6_like 104 179 - -
Aed8g0762 426 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 7 411 - -
Aed8g0762 426 SMART rrm1_1 16 92 IPR000504 GO:0003723
Aed8g0762 426 SMART rrm1_1 340 413 IPR000504 GO:0003723
Aed8g0762 426 SMART rrm1_1 104 179 IPR000504 GO:0003723
Aed8g0762 426 Gene3D - 2 99 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0762 Aed-Chr8 6523058 6527878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0762 338 425 Eukaryotic Initiation Factors Gene Family AT2G23350 31.818 3.64e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0762 K13207 - gmx:100807662 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0762 8 6523058 6527878 Aed8g0762 8 6523058 6527878 ECH
Aed2g2157 2 25542297 25547531 Aed8g0762 8 6523058 6527878 PCT