Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0755 ATGTCGTTTAGGAGTATCATCCTTGAAAGGAAGGGATTTGAGGTGAAGTTTGGGTATGGCATGAGATCCAGGTCACAGTCACACAGTGATGCTATTGCTCAGGATAGTTTGGTGGTGCTTGATGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCCCCTGAGCTTTTGAGGGATGTGCTCATGAGAATTGAGGCCTCTGAGGCTTCCTGGCCTGCCCGGAAACATGTCGTTGCCTGCGCCGGAGTTTGCCGCAGCTGGAGAGAAATCATGAAGGAAATTGTCAAGTCCCCTCAACTGTCCGCCAAGTTGACATTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTTCTACAGTGCTATATTAAACGAAATCGCAGTAATCAAACATATTATCTATTTCTTGGTTTAAACCAAGCCTCAACTGACGATGGCAAGTTCCTTCTTTCTGCACGCAAGTGTCGACGTGCAACTCACACTGACTATATCATCTCTCTAAACTGTGACGATGTATCAAGAGGAAGTAGTACATATATTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTCACCGTGTATGATGCACACCCTCCAATTTATGGAGCCAAAGTTACAAAGTCTCGTTCCACCAGGCTAGTTAGTCTCAAGCAAGTTTCTCCAAGAGTTCCTGCTGGCAACTATCCGATTGCTCACGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGAATAATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCAGTTGAACCTGGAGGTGTGGCCCCAACACAGACTCAATTTCTTCATAGCAGAATTGATACTTCTCCATCCATTCCTTTCTTTAGATCAAAATCAACCCGCATGGACAATCTCCCATCAGTACCACTGACTTGTCAAAACGAGGGGATGCTGGTATTACGAAACAAGTCCCCAAGGTGGCATGAACAACTTCAATGCTGGTGTCTGAACTTCAACGGGAGAGTGACAGTTGCTTCGGTTAAAAATTTCCAACTGGTTGCTTCTCCCAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTAACTCTACAGTTTGGAAAAGTTGGAAAGGATGTATTCACCATGGATTATCATACAACTAAGTTTCAGAATCCTCCTCCAACCTTTCCTTTATCTGTATTTCGTATATATGATGACCTTAGTTGTGATTGGCTTGTGAGAGAATCAGACAACACTGACTAG 1242 0.4485 MSFRSIILERKGFEVKFGYGMRSRSQSHSDAIAQDSLVVLDDGLKQSCWANMPPELLRDVLMRIEASEASWPARKHVVACAGVCRSWREIMKEIVKSPQLSAKLTFPISLKQPGPRDSLLQCYIKRNRSNQTYYLFLGLNQASTDDGKFLLSARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPIYGAKVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMDNLPSVPLTCQNEGMLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVTLQFGKVGKDVFTMDYHTTKFQNPPPTFPLSVFRIYDDLSCDWLVRESDNTD 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0755 413 Pfam F-box domain 49 95 IPR001810 GO:0005515
Aed8g0755 413 SUPERFAMILY Tubby C-terminal domain-like 99 378 IPR025659 -
Aed8g0755 413 PRINTS Tubby superfamily signature 331 347 IPR000007 -
Aed8g0755 413 PRINTS Tubby superfamily signature 358 377 IPR000007 -
Aed8g0755 413 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Aed8g0755 413 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Aed8g0755 413 PRINTS Tubby superfamily signature 313 330 IPR000007 -
Aed8g0755 413 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Aed8g0755 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 379 - -
Aed8g0755 413 Pfam Tub family 110 378 IPR000007 -
Aed8g0755 413 Gene3D Tubby Protein; Chain A 109 381 IPR025659 -
Aed8g0755 413 SUPERFAMILY F-box domain 43 101 IPR036047 GO:0005515
Aed8g0755 413 PANTHER TUBBY-RELATED 1 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0755 Aed-Chr8 6480081 6484456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0755 1 397 TUB Transcription Factor Family AT2G47900 70.171 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aed8g0755 Tub 5.7e-95 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0755 K19600 - gmx:100809257 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0755 8 6480081 6484456 Aed8g0755 8 6480081 6484456 ECH