Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0745 ATGGACTTGTACGGTCGGGGCCCCGCGAGAAACGGATCCAACCCGGTGAACCAATCCGAATGGCGCTCGCCGGGCACCGACACTGGTCTCGAAGAATCGATGTGGCATTTAACGCTGGCTGGTGGTGGCGGCGGCGGCGAATCTTACCCGGAGCGACCCGGAGCGGCTAATTGTGTCTATTACATGCGGACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGCGATCGTGCTACGGTTGTTGCGGCAGTAAGAGTTACAGGGGAGTACCCAGAAAGGGTGGGGGAACCCCCATGTCAGTATGGAGGAGCTTCCTCGAGCTTGAGAGTGGCCAGGCCTCCTGTAATGCCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCTCAAGGGCTTGTTCAATTTCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCTATCTCCTGGTGCTCAACCTGCTGTTGGAGCCACTTCTTTATACAGTGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCTCTGTCCTCTGCCACTGGCCCTTCAGGAAGCAGCCTGAGGGATCAATTATTTCCTGAAAGACCCGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATATGGATTAGCTTGTCGATATCATCATCCTCAGGATCATATTGTGTCACAGCCACTTCTTAGCCCTGTTGGACTTCCTTTGCGCCCAGTGCACTAG 765 0.5281 MDLYGRGPARNGSNPVNQSEWRSPGTDTGLEESMWHLTLAGGGGGGESYPERPGAANCVYYMRTGVCGYGGRCRYNHPRDRATVVAAVRVTGEYPERVGEPPCQYGGASSSLRVARPPVMPGSYVQGAYGPVLLSQGLVQFPGWSHYSAPVSPVLSPGAQPAVGATSLYSVTQLSSPTSAFARPYTPLSSATGPSGSSLRDQLFPERPGEPECQYYLRTGDCKYGLACRYHHPQDHIVSQPLLSPVGLPLRPVH 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0745 254 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Aed8g0745 254 SUPERFAMILY CCCH zinc finger 56 81 IPR036855 GO:0046872
Aed8g0745 254 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 104 252 - -
Aed8g0745 254 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 209 234 IPR000571 GO:0046872
Aed8g0745 254 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 56 79 IPR000571 GO:0046872
Aed8g0745 254 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 105 - -
Aed8g0745 254 PANTHER PROTEIN PHOSPHATASE RELATED 104 252 - -
Aed8g0745 254 SUPERFAMILY CCCH zinc finger 212 235 IPR036855 GO:0046872
Aed8g0745 254 ProSiteProfiles Zinc finger C3H1-type profile. 207 235 IPR000571 GO:0046872
Aed8g0745 254 PANTHER PROTEIN PHOSPHATASE RELATED 1 105 - -
Aed8g0745 254 MobiDBLite consensus disorder prediction 186 206 - -
Aed8g0745 254 MobiDBLite consensus disorder prediction 11 26 - -
Aed8g0745 254 SMART c3hfinal6 207 234 IPR000571 GO:0046872
Aed8g0745 254 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Aed8g0745 254 Gene3D - 188 242 - -
Aed8g0745 254 MobiDBLite consensus disorder prediction 1 29 - -
Aed8g0745 254 Gene3D - 47 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0745 Aed-Chr8 6366854 6370696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0745 5 252 C2H2 Transcription Factor Family AT5G18550 38.007 4.41e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed8g0745 zf-CCCH 9.8e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0745 - - gmx:100805017 325.479