Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0742 ATGGTGATGAATGATGAATTTCTTCATATTGTAACATGTACAGATCCGAATGCTGAAGTAATTGCATTATCACCAACCACATTAATGGCAACAAATAGATTCGTGTGTGAGGTCTGCAACAAAGGGTTCCAGAGGGACCAAAACCTTCAGTTGCACCGGAGAGGCCACAATCTTCCATGGAAACTGAGGCAGAGAGGAAGCAATGAGGTTGTGAAGAAAAGGGTTTATGTGTGCCCTGAGGCATCATGCGTCCACCATAACCCAGCTCGCGCATTAGGAGACCTCACTGGCATCAAAAAACATTACAGCAGAAAACATGGTGAAAAGAAATGGAAATGTGACGTGTGCTCTAAAAGATATGCAGTCCAATCTGATTGGAAGGCCCACCTCAAAACCTGTGGCACCAGAGAATACAAATGTGACTGTGGGACAATCTTTTCCAGAAGAGACAGTTTTATCACACACAGAGCCTTTTGTGACGCATTAACCGAAGAAAACAACCGAGTAATTAACCACTCATCAACGAGTGGTAGCATCATGACACCAACAACAACAATATTGCAAAATGAATTGCCGGATCTTATTTCAACAACAATGCCTCTTATAAGCACTAGTTCCAACAACACTGTATACAACCCTAAGAGTAGTCATCATGAAGAACACCTTGTCCCAATGCCATTCAAGTCCATGGACACAACAAGCATGTTCTCCAGTACTACTACTTCTTCAGGTACAGTACTCTTTGGTGGTCCAATAAAAACTCTGTCTTGTAATTCCAATACTCTTCAACTCAGCTCCAACAACTACTCCACTGCTTTCAATTACGCTTCTGCTACTGCCTCATCAGCTCACATGTCTGCCACAGCTTTATTGCAAAAAGCAGCACAAATGGGTGCCACTGCTGCAACAAGCAATAATAGCATTAATAATAATAACAACTCTGCTCCAACCATGATGCAGAAAAGCTTTGCAATTAGTGACCACAACCACAACTCTTCTTCCTATGACCACTTCCATCATCCAAACCCTGATGATCAATCTCATCACATGTCACTGATATTTGATTCTAATAACACCAATGATGTGGGAATGTTTGGTGCAATGTTCGTGGGAAGTGATCACCACAACCAAGGCTTGGAGCATGACTTCTTGGGCGTTGGGGGTGCAACTAATTCAAGGGTGCATGAACCACAGAAACAACAAAGATTGGAGTTAGAAGAAGCATTGACCCACCAGAGGTTGCAAATTATGAATCACTATCACCACCACCTTCCACATGGGGATTCTGCTATGGAGAAATCCATTTGGGACATTTGA 1317 0.426 MVMNDEFLHIVTCTDPNAEVIALSPTTLMATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLRQRGSNEVVKKRVYVCPEASCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDVCSKRYAVQSDWKAHLKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVINHSSTSGSIMTPTTTILQNELPDLISTTMPLISTSSNNTVYNPKSSHHEEHLVPMPFKSMDTTSMFSSTTTSSGTVLFGGPIKTLSCNSNTLQLSSNNYSTAFNYASATASSAHMSATALLQKAAQMGATAATSNNSINNNNNSAPTMMQKSFAISDHNHNSSSYDHFHHPNPDDQSHHMSLIFDSNNTNDVGMFGAMFVGSDHHNQGLEHDFLGVGGATNSRVHEPQKQQRLELEEALTHQRLQIMNHYHHHLPHGDSAMEKSIWDI 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0742 438 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Aed8g0742 438 SMART c2h2final6 34 56 IPR013087 -
Aed8g0742 438 SMART c2h2final6 111 131 IPR013087 -
Aed8g0742 438 SMART c2h2final6 76 106 IPR013087 -
Aed8g0742 438 SUPERFAMILY beta-beta-alpha zinc fingers 33 131 IPR036236 -
Aed8g0742 438 Pfam Zinc-finger of C2H2 type 34 56 - -
Aed8g0742 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 56 IPR013087 -
Aed8g0742 438 Gene3D Classic Zinc Finger 89 169 - -
Aed8g0742 438 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 14 387 - -
Aed8g0742 438 Gene3D Classic Zinc Finger 12 82 - -
Aed8g0742 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0742 Aed-Chr8 6345631 6348004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0742 15 308 IDZ Gene Family AT3G50700 54.206 1.88e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed8g0742 zf-met 0.0029 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0742 - - gmx:100797943 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0742 8 6345631 6348004 Aed8g0742 8 6345631 6348004 ECH