Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0706 ATGCTACTCAAAAGAGGTATTAATTATTTTAATTTTCGTAAGAAATCATTCTCTCCGATCTCATTCTCATCCACTGTTTCATCAACTCTCTTCTCTCGCATTTTCAATTTCATGGACCCAGACCCAGAAACTCAAGAAAAGTATGCCAGTAATGGCAAGCTCATGTTTGTCTCCACTATCCTTCTCTTTCTCATAGTAATCATCTTGGTTTTCGTTCACACCTTCCGTCGCCGCCACCGCCACGCTATTCGAAGCGCTTCCTCTGTGGCTTTTAACGAGGCTCGTCTTCGCCCTTCCGTTCTCAAATTCCTTCCCACCTTCACTTACTCCTGCGACAACCACCGCTCCCTCCACGACTGCACCGTGTGCTTGTCCGAGTTCGCCGACGGCGAAGAATTCCGCGTCCTTCCGAATTGTAACCACGCTTTCCACACCCATTGCGTTGACACTTGGTTCCGCTCTCACTCCAACTGTCCTCTTTGCCGAACCCCGGTCCAACCGTCCTCTATTACTGAACCGGTTTGGTGCCCGAGGAAGTCGGTGGAACTCGTAGGCATAATAGTGGAGCTGGAAGGAGACCCGGGTTCGGATCCGGGTCATGGGCCAACGACATCACGGGTTGAGAATCCAGGCCTTTATAAACACAAAGCTGTCAACGTTAACAATCAGAAAACAAACAAAAATCAAAGCAAAATGGGAAGCAAAAGAAACTACAACCTGTTGTCGGTGTTGGGTCTATGCATGTGCTTGATTTTATCAAATCACGAAAGCTTGGGCGAGGTTGAGTTAGTAGGGAAGACGCTAATCGACAATGTATGCAAACACAGGGGAAACGACGAGCTCTGCGAGCAGGTGCTATCGGCGGACCCAGAAAGCGAGCACGCGGACCTACAGGACCTGGCGTTGATAGCGCTGAAGGCCGCGGCGGCGAACGCGAGCGCGATACTTAATGACTGCAAGAAAATGATCGACAACCCCGATTTGGAACCCAAGATTCAACAGGGCCTGGCGGATTGCAAGGAGAATCTCTTGGACGCAGAGGGTCAAATCCAGGACGCCATCGCCTCCATCCTCTCCGATGAAAAGCTCGATGCCCAGGTCTGGCTCAAGGCCGCGTTGGCCGCCATTGATACATGCGACGATTCAATCCCCGGTGACGATGACATTCTCTCCAGAAGGAGTGTCGGCTTTCGCCAACTCTGCAACATTGCCGTCGGCATCAACAAGGCTATGCTGGGCGTCCCTAATCACCTCTAG 1257 0.5107 MLLKRGINYFNFRKKSFSPISFSSTVSSTLFSRIFNFMDPDPETQEKYASNGKLMFVSTILLFLIVIILVFVHTFRRRHRHAIRSASSVAFNEARLRPSVLKFLPTFTYSCDNHRSLHDCTVCLSEFADGEEFRVLPNCNHAFHTHCVDTWFRSHSNCPLCRTPVQPSSITEPVWCPRKSVELVGIIVELEGDPGSDPGHGPTTSRVENPGLYKHKAVNVNNQKTNKNQSKMGSKRNYNLLSVLGLCMCLILSNHESLGEVELVGKTLIDNVCKHRGNDELCEQVLSADPESEHADLQDLALIALKAAAANASAILNDCKKMIDNPDLEPKIQQGLADCKENLLDAEGQIQDAIASILSDEKLDAQVWLKAALAAIDTCDDSIPGDDDILSRRSVGFRQLCNIAVGINKAMLGVPNHL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0706 418 Pfam Plant invertase/pectin methylesterase inhibitor 268 405 IPR006501 GO:0004857
Aed8g0706 418 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 243 411 - -
Aed8g0706 418 CDD RING-H2_PA-TM-RING 119 162 - -
Aed8g0706 418 SMART ring_2 120 161 IPR001841 -
Aed8g0706 418 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Aed8g0706 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 168 IPR013083 -
Aed8g0706 418 TIGRFAM PME_inhib: pectinesterase inhibitor domain 240 411 IPR006501 GO:0004857
Aed8g0706 418 PANTHER PECTINESTERASE 243 411 - -
Aed8g0706 418 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 267 409 IPR035513 -
Aed8g0706 418 Pfam Ring finger domain 119 162 IPR001841 -
Aed8g0706 418 Gene3D Invertase/pectin methylesterase inhibitor family protein 265 412 IPR035513 -
Aed8g0706 418 SUPERFAMILY RING/U-box 106 168 - -
Aed8g0706 418 SMART PMEI_2 264 407 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0706 Aed-Chr8 6083190 6084729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0706 46 235 Rapid Response to Elicitors AT3G16720 31.390 1.22e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0706 - - gmx:100791255 252.292