Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0687 ATGGGAAAAGCAGATGCAAAGAAGAACAAACCCCCCTCCACCGAGCTCCACCCTCCTTACTTCGAGATGGTCGCGGATGCAATATCTTCGTTGAAAGAGCGCACGGGATCGAGCCAGCCAGCGATAGCGAAGTTCATAGAGGACAAGCACAGCAAAGTGCTCCCTCCAAACTTCAGGAAACTCCTCTCACTTCAGTTGAAGAAATTCGTGAAATCGGAGAAGCTTTACAAGGTGAAAAACTCCTACAAGCTTTCACCTCCAGCCACAGACAAACCCAAAACCGCGCCTAAAGAGAAAGTTGAAAAGAAGAAGGTGAGTGAGATTCGTGAGAAGACTAAGCGGCTGAGTCAAGTGAAGACACCAGAAGCTCTCAACAAGAAAGACGCAGCAGCAACAACTAAGAAGAAATCTGCGGCAGTTGGAGGGAAAGTGAAGAGTTTGAGTCAGGTGAAGACCCCTGAGGCCTTGAAGAAGAAGAAGCCCAATTTGACAACCAGATCCGCCAGGTCCACCAGGAATGCTAGGAAATGA 531 0.4859 MGKADAKKNKPPSTELHPPYFEMVADAISSLKERTGSSQPAIAKFIEDKHSKVLPPNFRKLLSLQLKKFVKSEKLYKVKNSYKLSPPATDKPKTAPKEKVEKKKVSEIREKTKRLSQVKTPEALNKKDAAATTKKKSAAVGGKVKSLSQVKTPEALKKKKPNLTTRSARSTRNARK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0687 176 MobiDBLite consensus disorder prediction 80 176 - -
Aed8g0687 176 Pfam linker histone H1 and H5 family 17 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed8g0687 176 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 16 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed8g0687 176 CDD H15 17 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed8g0687 176 SMART h15plus2 14 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed8g0687 176 PANTHER HISTONE H1 5 172 - -
Aed8g0687 176 PANTHER HISTONE H1 5 172 - -
Aed8g0687 176 MobiDBLite consensus disorder prediction 162 176 - -
Aed8g0687 176 Gene3D - 13 109 IPR036388 -
Aed8g0687 176 MobiDBLite consensus disorder prediction 92 121 - -
Aed8g0687 176 SUPERFAMILY "Winged helix" DNA-binding domain 16 98 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0687 Aed-Chr8 5942429 5943496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0687 18 130 Single Myb Histone (SMH) Gene Family AT1G72740 33.871 8.12e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0687 K11275 - gmx:100306187 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0687 8 5942429 5943496 Aed8g0687 8 5942429 5943496 ECH